Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 22 Aligned Residues 290 % Identity 25% Template c2ldxA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-lactate dehydrogenase; PDBTitle: characterization of the antigenic sites on the refined 3-2 angstroms resolution structure of mouse testicular lactate3 dehydrogenase c4 Resolution 2.96 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V
Query Conservation																																						.
Alig confidence									.																.													.
Template Conservation									.																.
Template Sequence		C	K	I	T	V	V	G	.	V	G	D	V	G	M	A	C	A	I	S	I	L	L	K	.	G	L	A	D	E	L	A	L	V	D	A	D	T	D	K	L	R	G	E	A	L	D	L	Q	H	G	S	L	F	L	S	T	P	K	I	V	F	G	K	D	Y	N	V	S	A	N	S	K	L	V	I	I	T	A	G	A
Template Known Secondary structure									.		S												T	T	.	T	S		S							S															T	T	T	T		S								S	S	G	G	G	G	T	T									S
Template Predicted Secondary structure									.																.
Template SS confidence
		20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V
Query Conservation																																																																				.
Alig confidence																																																				.	.	.	.													.
Template Conservation																																																				.	.	.	.
Template Sequence		R	M	V	S	G	Q	T	R	L	D	L	L	Q	R	N	V	A	I	M	K	A	I	V	P	G	V	I	Q	N	S	P	D	C	K	I	I	V	V	T	N	P	V	D	I	L	T	Y	V	V	W	.	.	.	.	K	I	S	G	F	P	V	G	R	V	I	G	S	G	C	N	L	D	S	A	R	F	R	Y	L	I
Template Known Secondary structure					T	T	T		S	S		T	T											T	T	T					S	T	T							S	S	S										.	.	.	.					S		T	T	T					T	T
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.												.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																															.										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	F	T	E	.	.	.	.	.	.	.	.	.	.	.	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S
Query Conservation																															.										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.										.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		G	E	K	L	G	V	N	P	T	S	C	H	G	W	V	L	G	E	H	G	D	S	S	V	P	I	W	S	G	V	N	V	A	G	V	T	L	K	S	L	N	P	A	I	G	T	D	K	N	K	Q	H	W	K	N	V	H	K	Q	V	V	E	G	G	Y	E	V	L	D	M	K	.	.	.	G	Y	T	S	W	A
Template Known Secondary structure						T			T	T	S	S								S	S	S						G	G	G		B	S	S		S	S	S	S	B	S	T	T	T		S		S	S	S	S	S	S																				.	.	.	S	S
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.				.	.	.	.	.	250
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																					.	.	.	.
Query SS confidence																																					.	.	.	.
Query Sequence		M	G	Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	.	.	.	.	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D
Query Conservation																																					.	.	.	.
Alig confidence															.	.	.	.																			.	.	.	.																					.
Template Conservation															.	.	.	.																																											.
Template Sequence		I	G	L	S	V	T	D	L	A	R	S	I	L	.	.	.	.	K	N	L	K	R	V	H	P	V	T	T	L	V	K	G	F	H	G	I	K	E	E	V	F	L	S	I	P	C	V	L	G	E	S	G	I	T	D	F	V	K	V	.	N	M	T	A	E	E	E	G	L	L	K	K	S	A	D	T	L	W	N	M
Template Known Secondary structure															.	.	.	.	T	T												T	T	S	T	T			S	S											T	T									.
Template Predicted Secondary structure															.	.	.	.																																											.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		303	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		326	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions