Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 34 Aligned Residues 294 % Identity 29% Template c2fnzA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:lactate dehydrogenase; PDBTitle: crystal structure of the lactate dehydrogenase from cryptosporidium2 parvum complexed with cofactor (b-nicotinamide adenine dinucleotide)3 and inhibitor (oxamic acid) Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.																							.
Query SS confidence																																						.																							.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	.	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G
Query Conservation																																						.																							.
Alig confidence									.																	.	.											.																							.
Template Conservation									.																	.	.
Template Sequence		R	K	I	A	V	I	G	.	S	G	Q	I	G	G	N	I	A	Y	I	V	G	K	D	N	.	.	L	A	D	V	V	L	F	D	I	A	E	G	I	P	Q	G	K	A	L	D	I	T	H	S	M	V	M	F	G	S	T	S	K	V	I	G	T	N	D	Y	A	D	I	S	G	S	D	V	V	I	I	T	A	S
Template Known Secondary structure									.		S														T	.	.		S							S	S	S	S																	T											G	G	G	G	T	T		S
Template Predicted Secondary structure									.																	.	.
Template SS confidence
		21	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		V	A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F
Query Conservation																																																																					.
Alig confidence																																																					.	.	.	.													.
Template Conservation																																																					.	.	.	.
Template Sequence		I	P	G	R	P	K	D	D	R	S	E	L	L	F	G	N	A	R	I	L	D	S	V	A	E	G	V	K	K	Y	C	P	N	A	F	V	I	C	I	T	N	P	L	D	V	M	V	S	H	F	Q	.	.	.	.	K	V	S	G	L	P	H	N	K	V	C	G	M	A	G	V	L	D	S	S	R	F	R	T	F
Template Known Secondary structure			S	S			S	S		G	G	G	G																				T	T	S							S	S										.	.	.	.							G	G	G
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.										.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																.							.	.	.	.	.	.	.	.	.
Query SS confidence																																.							.	.	.	.	.	.	.	.	.
Query Sequence		V	A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	.	.	.	.	.	.	.	.	.	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M
Query Conservation																																.							.	.	.	.	.	.	.	.	.
Alig confidence																																.							.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																								.
Template Sequence		I	A	Q	H	F	G	V	N	A	S	D	V	S	A	N	V	I	G	G	H	G	D	G	M	V	P	A	T	S	S	V	S	V	G	G	V	P	L	S	S	F	I	K	Q	G	L	I	T	Q	E	Q	I	D	E	I	V	C	H	T	R	I	A	W	K	E	V	A	D	N	L	.	K	T	G	T	A	Y	F	A	P
Template Known Secondary structure							T			G	G	G						B	B		S	S	T	T		B			G	G	G				T	T									T	T	S	S														T										.		S	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		G	Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	.	.	.	A	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I	A
Query Conservation																																			.	.	.
Alig confidence														.	.	.	.																		.	.	.																						.
Template Conservation														.	.	.	.																																										.
Template Sequence		A	A	A	A	V	K	M	A	E	A	Y	L	.	.	.	.	K	D	K	K	A	V	V	P	C	S	A	F	C	S	N	H	Y	G	V	K	G	I	Y	M	G	V	P	T	I	I	G	K	N	G	V	E	D	I	L	E	L	.	D	L	T	P	L	E	Q	K	L	L	G	E	S	I	N	E	V	N	T	I	S	K
Template Known Secondary structure														.	.	.	.	T	T												S	S	B	T	T	B	S	S											T	T									.
Template Predicted Secondary structure														.	.	.	.																																										.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		305	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		328	.	330

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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