Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 23 Aligned Residues 284 % Identity 28% Template c2e37B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:l-lactate dehydrogenase; PDBTitle: structure of tt0471 protein from thermus thermophilus Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V
Query Conservation																																						.
Alig confidence									.																.													.															.																											.	.
Template Conservation									.																.																												.																											.	.
Template Sequence		X	K	V	G	I	V	G	.	S	G	X	V	G	S	A	T	A	Y	A	L	A	L	L	.	G	V	A	R	E	V	V	L	V	D	L	D	R	K	L	A	Q	A	H	A	E	D	I	L	H	A	T	.	P	F	A	H	P	V	W	V	R	A	G	S	Y	G	D	L	E	G	A	R	A	V	V	L	A	A	.	.
Template Known Secondary structure									.		S													T	.	T			S							S	S													T	T	G	.	G	G	S										G	G	G	G	T	T		S							.	.
Template Predicted Secondary structure									.																.																												.																											.	.
Template SS confidence
		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V
Query Conservation																																																																				.
Alig confidence		.	.	.	.																																															.	.	.	.													.
Template Conservation		.	.	.	.																																															.	.	.	.
Template Sequence		.	.	.	.	G	V	A	R	L	Q	L	L	D	R	N	A	Q	V	F	A	Q	V	V	P	R	V	L	E	A	A	P	E	A	V	L	L	V	A	T	N	P	V	D	V	X	T	Q	V	A	Y	.	.	.	.	R	L	S	G	L	P	P	G	R	V	V	G	S	G	T	I	L	D	T	A	R	F	R	A	L	L
Template Known Secondary structure		.	.	.	.	S																										T	T							S	S	S										.	.	.	.					S		G	G	G					T	T
Template Predicted Secondary structure		.	.	.	.																																															.	.	.	.
Template SS confidence
						76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.												.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																															.							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	.	.	.	.	.	.	.	.	.	.	.	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S
Query Conservation																															.							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.							.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		A	E	Y	L	R	V	A	P	Q	S	V	H	A	Y	V	L	G	E	H	G	D	S	E	V	L	V	W	S	S	A	Q	V	G	G	V	P	L	L	E	F	A	E	A	R	G	R	A	L	S	P	E	D	R	A	R	I	D	E	G	V	R	R	A	A	Y	R	I	I	E	G	K	.	.	.	G	A	T	Y	Y	G
Template Known Secondary structure						T	S		G	G	G							B	S	S	S	T	T											T	T											T																	T										.	.	.	S
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		M	G	Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	.	.	.	A	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I
Query Conservation																																				.	.	.
Alig confidence															.	.	.	.																		.	.	.																						.
Template Conservation															.	.	.	.																																										.
Template Sequence		I	G	A	G	L	A	R	L	V	R	A	I	L	.	.	.	.	T	D	E	K	G	V	Y	T	V	S	A	F	T	P	E	V	E	G	V	L	E	V	S	L	S	L	P	R	I	L	G	A	G	G	V	E	G	T	V	Y	P	.	S	L	S	P	E	E	R	E	A	L	R	R	S	A	E	I	L	K	E	A	A
Template Known Secondary structure															.	.	.	.	T	T															T	T														T	T									.
Template Predicted Secondary structure															.	.	.	.																																										.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		304	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		306	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions