Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 20 Aligned Residues 287 % Identity 23% Template c2d4aC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:malate dehydrogenase; PDBTitle: structure of the malate dehydrogenase from aeropyrum pernix Resolution 2.87 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																				.																									.
Query SS confidence																																				.																									.
Query Sequence		V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	.	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V	A
Query Conservation																																				.																									.
Alig confidence							.																		.	.										.																									.
Template Conservation							.																		.	.
Template Sequence		I	T	I	L	G	.	A	G	K	V	G	M	A	T	A	V	M	L	M	M	R	G	Y	.	.	D	D	L	L	L	I	A	R	T	P	G	K	P	Q	G	E	A	L	D	L	A	H	A	A	A	E	L	G	V	D	I	R	I	S	G	S	N	S	Y	E	D	M	R	G	S	D	I	V	L	V	T	A	G	I	G
Template Known Secondary structure							.		S														T		.	.	S							S	S	T	T																	T									S		G	G	G	G	T	T		S
Template Predicted Secondary structure							.																		.	.
Template SS confidence
		2	.	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V	A
Query Conservation																																																																			.
Alig confidence				.	.	.	.	.	.	.	.																																								.	.	.	.													.
Template Conservation				.	.	.	.	.	.	.	.																																								.	.	.	.
Template Sequence		R	K	.	.	.	.	.	.	.	.	L	E	A	N	A	N	T	M	A	D	L	A	E	K	I	K	A	Y	A	K	D	A	I	V	V	I	T	T	N	P	V	D	A	M	T	Y	V	M	Y	.	.	.	.	K	K	T	G	F	P	R	E	R	V	I	G	F	S	G	I	L	D	S	A	R	M	A	Y	Y	I	S
Template Known Secondary structure				.	.	.	.	.	.	.	.		T	T																	T	T	S							S	S										.	.	.	.				T			G	G	G
Template Predicted Secondary structure				.	.	.	.	.	.	.	.																																								.	.	.	.
Template SS confidence
		79	80									.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																														.							.	.	.	.
Query SS confidence																														.							.	.	.	.
Query Sequence		E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	.	.	.	.	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M	G	Q	A	A	A	R	F
Query Conservation																														.							.	.	.	.
Alig confidence																														.							.	.	.	.																									.	.
Template Conservation																																																																	.	.
Template Sequence		Q	K	L	G	V	S	F	K	S	V	N	A	I	V	L	G	M	H	G	Q	K	M	F	P	V	P	R	L	S	S	V	G	G	V	P	L	E	H	L	M	S	K	E	E	I	E	E	V	V	S	E	T	V	N	A	G	A	K	I	T	E	L	R	.	.	G	Y	S	S	N	Y	G	P	A	A	G	L	V	L	T
Template Known Secondary structure					T	S		G	G	G							B		S	S	T	T					G	G	G				T	T			G	G	G	T	S														T										.	.	S	S			S
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	.	.	.	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I	A	L	G	E	E	F	V	N
Query Conservation																													.	.	.
Alig confidence							.	.	.	.																			.	.	.																					.
Template Conservation							.	.	.	.																																										.
Template Sequence		V	E	A	I	K	.	.	.	.	R	D	S	K	R	I	Y	P	Y	S	L	Y	L	Q	G	E	Y	G	Y	N	D	I	V	A	E	V	P	A	V	I	G	K	S	G	I	E	R	I	I	E	L	.	P	L	T	E	D	E	K	R	K	F	D	E	A	V	Q	A	V	K	K	L	V	E	T	L	P	P	Q	L	R
Template Known Secondary structure							.	.	.	.	T	T													S	G	G	G														T	T									.																								S		G	G	G
Template Predicted Secondary structure							.	.	.	.																																										.
Template SS confidence
		233	.	.	.	.					.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions