Job Description P61889 Confidence 99.93% Date Thu Jan 5 12:07:26 GMT 2012 Rank 97 Aligned Residues 294 % Identity 19% Template c1vjtA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																			.	.									.	.	.																							.	.	.
Query SS confidence																			.	.									.	.	.																							.	.	.
Query Sequence		K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	.	.	L	L	K	T	Q	L	P	S	.	.	.	G	S	E	L	S	L	Y	D	I	A	P	V	T	P	G	V	A	V	D	L	S	H	.	.	.	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V
Query Conservation																			.	.									.	.	.																							.	.	.
Alig confidence								.											.	.									.	.	.																							.	.	.
Template Conservation								.
Template Sequence		K	I	S	I	I	G	.	A	G	S	V	R	F	A	L	Q	L	V	G	D	I	A	Q	T	E	E	L	S	R	E	D	T	H	I	Y	X	X	D	V	H	E	R	R	L	N	A	S	Y	I	L	A	R	K	Y	V	E	E	L	N	S	P	V	K	I	V	K	T	S	S	L	D	E	A	I	D	G	A	D	F	I
Template Known Secondary structure							T	.	T	T	S														S	T	T	T		S	T	T								S																				T									S							T	T		S
Template Predicted Secondary structure								.
Template SS confidence
		2	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		74	.	.	.	.	.																																80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		L	I	S	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	.	.	.	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation
Template Sequence		I	N	T	A	Y	P	Y	D	P	R	Y	H	D	S	G	S	Q	R	W	D	E	V	T	K	V	G	E	K	H	G	Y	Y	R	G	I	D	S	Q	E	L	N	X	V	S	T	Y	T	Y	V	L	S	S	Y	P	D	X	K	L	A	L	E	I	A	E	K	X	K	K	X	A	P	K	A	Y	L	X	Q	T	A	N
Template Known Secondary structure										T	T	T		S	S															T	T		T	T		T	T		B	T	T	B			T	T	S		S	T	T	T																				T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	V	T	T	L	D	I	I	R	S	N	T	F	V	A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	Q	V	P	G	V	S	F	T	E	Q	E	V
Query Conservation
Alig confidence														.	.	.	.	.	.	.																		.	.																						.	.
Template Conservation														.	.	.	.	.	.	.																		.	.																						.	.
Template Sequence		P	V	F	E	I	T	Q	A	V	R	R	W	.	.	.	.	.	.	.	T	G	A	N	I	V	G	F	C	H	G	V	A	G	V	Y	E	.	.	V	F	E	K	L	D	L	D	P	E	E	V	D	W	Q	V	A	G	V	N	H	.	.	G	I	W	L	N	R	F	R	Y	R	G	E	D	A	Y	P	L	L	D
Template Known Secondary structure														.	.	.	.	.	.	.	S										G	G	G	G				.	.					T	T			G	G	G									T	T	.	.										T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.																		.	.																						.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.								.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		200	.	.	.	.																																																																										.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	L	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	W	I	E	K	K	L	P	E	W	E	P	K	N	P	W	D	T	Q	X	S	P	A	A	X	D	X	Y	K	F	Y	G	X	L	P	I	G	D	T	V	R	N	G	S	W	K	Y	H	Y	N	L	E	T	K	K	K	W	F	G	K	F	G	G	I	D	N	E	V	E	R	P	K	F	H	E	Q	L	R	R	A
Template Known Secondary structure							T	G	G	G				S	S	T	T			T	T	S											S	S				G	G	G	T	T	S			G	G	G	T	S	S										T	T			S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230									.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.						.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.																													.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.																													.	.	.	.	.
Query Sequence		Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M	G	Q	A	.	.	.	.	.	.	.	.	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	.	.	.	.	.	Q	Y	A	R	F	F	S	Q	P	L	L	L	G	K	N
Query Conservation																										.	.	.	.	.	.	.	.																													.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation
Template Sequence		R	E	R	L	I	K	L	A	E	E	V	Q	Q	N	P	G	X	K	L	T	E	E	H	P	E	I	F	P	K	G	K	L	S	G	E	Q	H	I	P	F	I	N	A	I	A	N	N	K	R	V	R	L	F	L	N	V	E	N	Q	G	T	L	K	D	F	P	D	D	V	V	X	E	L	P	V	W	V	D	C	C
Template Known Secondary structure																T	T								T	T	T	S		S	S						S																							T	T	S	S	T	T	S		S	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	.	.	L	E	G	M	L	D	T	L	K	K	D	I	A	L	G	E	E
Query Conservation																				.	.
Alig confidence						.														.	.
Template Conservation						.
Template Sequence		G	I	H	R	.	E	K	V	E	P	D	L	T	H	R	I	K	I	F	Y	L	W	P	R	I	L	R	X	E	W	N	L	E	A	Y	I	S
Template Known Secondary structure						.					S										T
Template Predicted Secondary structure						.
Template SS confidence
		390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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