Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 26 Aligned Residues 286 % Identity 27% Template c1ur5C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:malate dehydrogenase; PDBTitle: stabilization of a tetrameric malate dehydrogenase by2 introduction of a disulfide bridge at the dimer/dimer3 interface Resolution 1.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																									.
Query SS confidence																																					.																									.
Query Sequence		K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	.	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V
Query Conservation																																					.																									.
Alig confidence								.																	.	.											.																									.																			.
Template Conservation								.																	.	.																																																							.
Template Sequence		K	I	S	I	I	G	.	A	G	F	V	G	S	T	T	A	H	W	L	A	A	K	E	.	.	L	G	D	I	V	L	L	D	I	V	E	G	V	P	Q	G	K	A	L	D	L	Y	E	A	S	P	I	E	G	F	D	V	R	V	T	G	T	N	N	Y	A	D	T	A	N	S	D	V	I	V	V	T	S	G	.
Template Known Secondary structure								.		S													T	T	.	.		S							S	S	T	T											T	T					T									S		G	G	G	G	T	T		S								.
Template Predicted Secondary structure								.																	.	.																																																							.
Template SS confidence
		4	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V
Query Conservation																																																																				.
Alig confidence		.	.	.	.	.	.																																													.	.	.	.													.
Template Conservation		.	.	.	.	.	.																																													.	.	.	.
Template Sequence		.	.	.	.	.	.	A	R	E	D	L	I	K	V	N	A	D	I	T	R	A	C	I	S	Q	A	A	P	L	S	P	N	A	V	I	I	M	V	N	N	P	L	D	A	M	T	Y	L	A	A	.	.	.	.	E	V	S	G	F	P	K	E	R	V	I	G	Q	A	G	V	L	D	A	A	R	Y	R	T	F	I
Template Known Secondary structure		.	.	.	.	.	.																					G	G	G		T	T								S	S										.	.	.	.							G	G	G					S
Template Predicted Secondary structure		.	.	.	.	.	.																																													.	.	.	.
Template SS confidence
								80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																															.							.	.	.	.
Query SS confidence																															.							.	.	.	.
Query Sequence		A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	.	.	.	.	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M	G	Q	A	A	A	R
Query Conservation																															.							.	.	.	.
Alig confidence																															.							.	.	.	.																									.
Template Conservation																																																																		.
Template Sequence		A	M	E	A	G	V	S	V	E	D	V	Q	A	M	L	M	G	G	H	G	D	E	M	V	P	L	P	R	F	S	C	I	S	G	I	P	V	S	E	F	I	A	P	D	R	L	A	Q	I	V	E	R	T	R	K	G	G	G	E	I	V	N	L	L	.	K	T	G	S	A	Y	Y	A	P	A	A	A	T	A	Q
Template Known Secondary structure						T			G	G	G									S	G	G	G					G	G	G				T	T			G	G	G	T	S														T										.	S	S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	.	.	.	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I	A	L	G	E
Query Conservation																														.	.	.
Alig confidence								.	.	.	.																			.	.	.																					.
Template Conservation								.	.	.	.																																										.
Template Sequence		M	V	E	A	V	L	.	.	.	.	K	D	K	K	R	V	M	P	V	A	A	Y	L	T	G	Q	Y	G	L	N	D	I	Y	F	G	V	P	V	I	L	G	A	G	G	V	E	K	I	L	E	L	.	P	L	N	E	E	E	M	A	L	L	N	A	S	A	K	A	V	R	A	T	L	D	T	L	K
Template Known Secondary structure								.	.	.	.	T	T													S	G	G	G														T	T									.
Template Predicted Secondary structure								.	.	.	.																																										.
Template SS confidence
		236	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions