Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 29 Aligned Residues 286 % Identity 28% Template c1u4sA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: plasmodium falciparum lactate dehydrogenase complexed with 2,6-2 naphthalenedisulphonic acid Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																									.
Query SS confidence																																					.																									.
Query Sequence		K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	.	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V
Query Conservation																																					.																									.
Alig confidence								.																	.	.											.																									.
Template Conservation								.																	.	.
Template Sequence		K	I	V	L	V	G	.	S	G	M	I	G	G	V	M	A	T	L	I	V	Q	K	N	.	.	L	G	D	V	V	L	F	D	I	V	K	N	M	P	H	G	K	A	L	D	T	S	H	T	N	V	M	A	Y	S	N	C	K	V	S	G	S	N	T	Y	D	D	L	A	G	A	D	V	V	I	V	T	A	G	F
Template Known Secondary structure								.		S													T	T	.	.									S	S	S	S											T						T									S		G	G	G	G	T	T		S							S
Template Predicted Secondary structure								.																	.	.
Template SS confidence
		22	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V
Query Conservation																																																																				.
Alig confidence			.	.	.	.																																														.	.	.	.													.
Template Conservation			.	.	.	.																																														.	.	.	.
Template Sequence		T	.	.	.	.	K	N	R	D	D	L	L	P	L	N	N	K	I	M	I	E	I	G	G	H	I	K	K	N	C	P	N	A	F	I	I	V	V	T	N	P	V	D	V	M	V	Q	L	L	H	.	.	.	.	Q	H	S	G	V	P	K	N	K	I	I	G	L	G	G	V	L	D	T	S	R	L	K	Y	Y	I
Template Known Secondary structure			.	.	.	.			G	G	G	G																				T	T							S	S	S										.	.	.	.							G	G	G
Template Predicted Secondary structure			.	.	.	.																																														.	.	.	.
Template SS confidence
		101					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.										.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.							.	.	.	.	.	.	.	.	.
Query SS confidence																															.							.	.	.	.	.	.	.	.	.
Query Sequence		A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	.	.	.	.	.	.	.	.	.	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M	G
Query Conservation																															.							.	.	.	.	.	.	.	.	.
Alig confidence																															.							.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		S	Q	K	L	N	V	C	P	R	D	V	N	A	H	I	V	G	A	H	G	N	K	M	V	L	L	K	R	Y	I	T	V	G	G	I	P	L	Q	E	F	I	N	N	K	L	I	S	D	A	E	L	E	A	I	F	D	R	T	V	N	T	A	L	E	I	V	N	L	H	.	.	.	A	S	P	Y	V	A	P	A
Template Known Secondary structure						T	S		G	G	G							B		S	S	T	T					G	G	G				T	T									T	T	S	S														T								T	T	.	.	.
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	.	.	.	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I	A	L
Query Conservation																																			.	.	.
Alig confidence													.	.	.	.																			.	.	.																					.
Template Conservation													.	.	.	.																																										.
Template Sequence		A	A	I	I	E	M	A	E	S	Y	L	.	.	.	.	K	D	L	K	K	V	L	I	C	S	T	L	L	E	G	Q	Y	G	H	S	D	I	F	G	G	T	P	V	V	L	G	A	N	G	V	E	Q	V	I	E	L	.	Q	L	N	S	E	E	K	A	K	F	D	E	A	I	A	E	T	K	R	M	K	A	L
Template Known Secondary structure													.	.	.	.	T	T													S	G	G	G														T	T									.
Template Predicted Secondary structure													.	.	.	.																																										.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		306
Predicted Secondary structure
Query SS confidence
Query Sequence		G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		329

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions