Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 21 Aligned Residues 296 % Identity 28% Template c1pzfD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:lactate dehydrogenase; PDBTitle: t.gondii ldh1 ternary complex with apad+ and oxalate Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																						.																								.	.
Query SS confidence																																						.																								.	.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	.	.	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A
Query Conservation																																						.																								.	.
Alig confidence									.																	.	.											.																								.	.
Template Conservation									.																	.	.
Template Sequence		K	K	V	A	M	I	G	.	S	G	M	I	G	G	T	M	G	Y	L	C	A	L	R	E	.	.	L	A	D	V	V	L	Y	D	V	V	K	G	M	P	E	G	K	A	L	D	L	S	H	V	T	S	V	V	D	T	N	V	S	V	R	A	E	Y	S	Y	E	A	A	L	T	G	A	D	C	V	I	V	T	A
Template Known Secondary structure								S	.		S														T	.	.									S	S	S	S																T	T										S						T	T		S
Template Predicted Secondary structure									.																	.	.
Template SS confidence
		21	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.
Predicted Secondary structure										.	.	.	.	.																																																													.
Query SS confidence										.	.	.	.	.																																																													.
Query Sequence		G	V	A	R	K	P	G	M	.	.	.	.	.	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I
Query Conservation										.	.	.	.	.																																																													.
Alig confidence										.	.	.	.	.																																													.	.	.	.													.
Template Conservation																																																											.	.	.	.
Template Sequence		G	L	T	K	V	P	G	K	P	D	S	E	W	S	R	N	D	L	L	P	F	N	S	K	I	I	R	E	I	G	Q	N	I	K	K	Y	C	P	K	T	F	I	I	V	V	T	N	P	L	D	C	M	V	K	V	M	C	.	.	.	.	E	A	S	G	V	P	T	N	M	I	C	G	M	A	C	M	L	D	S
Template Known Secondary structure		S		S	S		T	T			G	G	G			S	G	G	G																				T	T	S							S	S										.	.	.	.							T	T	S
Template Predicted Secondary structure																																																											.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.										.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																						.							.	.	.	.	.	.	.	.	.
Query SS confidence																																						.							.	.	.	.	.	.	.	.	.
Query Sequence		I	R	S	N	T	F	V	A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	.	.	.	.	.	.	.	.	.	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G
Query Conservation																																						.							.	.	.	.	.	.	.	.	.
Alig confidence																																						.							.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																														.
Template Sequence		G	R	F	R	R	Y	V	A	D	A	L	S	V	S	P	R	D	V	Q	A	T	V	I	G	T	H	G	D	C	M	V	P	L	V	R	Y	I	T	V	N	G	Y	P	I	Q	K	F	I	K	D	G	V	V	T	E	K	Q	L	E	E	I	A	E	H	T	K	V	S	G	G	E	I	V	R	F	L	.	G	Q	G
Template Known Secondary structure													T	S		G	G	G							B		S	S	T	T					G	G	G				T	T									T	T	S	S																								.	S	S	S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		S	A	T	L	S	M	G	Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	.	.	.	A	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T
Query Conservation																																									.	.	.
Alig confidence																				.	.	.	.																		.	.	.																						.
Template Conservation																				.	.	.	.																																										.
Template Sequence		S	A	Y	Y	A	P	A	A	S	A	V	A	M	A	T	S	F	L	.	.	.	.	N	D	E	K	R	V	I	P	C	S	V	Y	C	N	G	E	Y	G	L	K	D	M	F	I	G	L	P	A	V	I	G	G	A	G	I	E	R	V	I	E	L	.	E	L	N	E	E	E	K	K	Q	F	Q	K	S	V	D	D
Template Known Secondary structure																				.	.	.	.	T	T													S	G	G	G														T	T									.
Template Predicted Secondary structure																				.	.	.	.																																										.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	K	D	I	A	L	G	E	E	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	M	A	L	N	K	A	V	A	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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