Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 38 Aligned Residues 296 % Identity 25% Template c1llcA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: structure determination of the allosteric l-lactate dehydrogenase from2 lactobacillus casei at 3.0 angstroms resolution Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V
Query Conservation																																						.
Alig confidence									.																.													.																						.
Template Conservation									.																.																																			.
Template Sequence		Q	K	V	I	L	V	G	.	D	G	A	V	G	S	S	Y	A	F	A	M	V	L	Q	.	G	I	A	Q	E	I	G	I	V	D	I	F	K	D	K	T	K	G	D	A	I	D	L	S	N	A	L	P	F	T	S	P	K	K	.	I	Y	S	A	E	Y	S	D	A	K	D	A	D	L	V	V	I	T	A	G	A
Template Known Secondary structure							S		.	T	T														.	T			S	S						S		S											T	T	S		T	T	S					.	B				T	T	T	T	T	S	S		S					B	T
Template Predicted Secondary structure									.																.																																			.
Template SS confidence
		22	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V
Query Conservation																																																																				.
Alig confidence																																																				.	.	.	.													.
Template Conservation																																																				.	.	.	.
Template Sequence		P	K	Q	P	G	E	T	R	L	D	L	V	N	K	N	L	K	I	L	K	S	I	V	D	P	I	V	D	S	G	F	N	L	I	F	L	V	A	A	N	P	V	D	I	L	T	Y	A	T	W	.	.	.	.	K	L	S	G	F	P	K	N	R	V	V	G	S	G	T	S	L	D	T	A	R	F	R	Q	S	I
Template Known Secondary structure			S	S		S	S	S		S	T					T	T	S	T	T	T	T	T	T						T	T			S					B		S	S										.	.	.	.							T	T	T					T	T
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.											.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																															.							.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.							.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	.	.	.	.	.	.	.	.	.	.	F	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M
Query Conservation																															.							.	.	.	.	.	.	.	.	.	.
Alig confidence																															.							.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		A	E	M	V	N	V	D	A	R	S	V	H	A	Y	I	M	G	E	H	G	D	T	E	F	P	V	W	S	H	A	N	I	G	G	V	T	I	A	E	W	V	K	A	H	P	E	I	K	E	D	K	L	V	K	M	F	E	D	V	R	D	A	A	Y	E	I	I	K	L	K	.	.	.	G	A	T	F	Y	G	I
Template Known Secondary structure					S				T	T	S							B	S	S	S	S	S										S	T	T			S	S	S	S	S	S		S		S	S	S	S	S	S	S	S	T	T	T	T	T	T	G	G	G	T	T	T	T	S	S	S	S	.	.	.	S		T	T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		G	Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	.	.	.	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I	A
Query Conservation																																				.	.	.
Alig confidence														.	.	.	.																			.	.	.																					.
Template Conservation														.	.	.	.																																										.
Template Sequence		A	T	A	L	A	R	I	S	K	A	I	L	.	.	.	.	N	D	E	N	A	V	L	P	L	S	V	Y	M	D	G	Q	Y	G	I	N	D	L	Y	I	G	T	P	A	V	I	N	R	N	G	I	Q	N	I	L	E	I	.	P	L	T	D	H	E	E	E	S	M	Q	K	S	A	S	Q	L	K	K	V	L	T
Template Known Secondary structure														.	.	.	.		T												S	S	S	S	S			S	S			B							T	T									.			T	T								T	T	T	T	T	T	T	T	T	T	T
Template Predicted Secondary structure														.	.	.	.																																										.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		305	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E	E	F	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	F	A	K	N	D
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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