Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 9 Aligned Residues 291 % Identity 20% Template c1hyhA_ PDB info PDB header:oxidoreductase (choh(d)-nad+(a)) Chain: A: PDB Molecule:l-2-hydroxyisocaproate dehydrogenase; PDBTitle: crystal structure of l-2-hydroxyisocaproate dehydrogenase from2 lactobacillus confusus at 2.2 angstroms resolution-an example of3 strong asymmetry between subunits Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G	V	A
Query Conservation																																					.
Alig confidence								.																.													.
Template Conservation								.																.
Template Sequence		K	I	G	I	I	G	.	L	G	N	V	G	A	A	V	A	H	G	L	I	A	Q	.	G	V	A	D	D	Y	V	F	I	D	A	N	E	A	K	V	K	A	D	Q	I	D	F	Q	D	A	M	A	N	L	E	A	H	G	N	I	V	I	N	D	W	A	A	L	A	D	A	D	V	V	I	S	T	L	G	N	I
Template Known Secondary structure								.		S														.	T			S							S	S															G	G	G	S	S	S							S		G	G	G	G	T	T		S							S		G
Template Predicted Secondary structure								.																.
Template SS confidence
		23	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F	V	A
Query Conservation																																																																			.
Alig confidence												.	.	.																																					.	.	.	.													.
Template Conservation												.	.	.																																					.	.	.	.
Template Sequence		K	L	Q	Q	F	A	E	L	K	F	.	.	.	T	S	S	M	V	Q	S	V	G	T	N	L	K	E	S	G	F	H	G	V	L	V	V	I	S	N	P	V	D	V	I	T	A	L	F	Q	.	.	.	.	H	V	T	G	F	P	A	H	K	V	I	G	T	G	T	L	L	D	T	A	R	M	Q	R	A	V	G
Template Known Secondary structure		G	G	T			T	T				.	.	.															T	T			S						S	S	S										.	.	.	.							G	G	G					T	T
Template Predicted Secondary structure												.	.	.																																					.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																														.											.
Query SS confidence																														.											.
Query Sequence		E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	F	T	E	Q	.	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M	G	Q	A	A	A	R	F	G	L	S
Query Conservation																														.											.
Alig confidence																														.											.																					.	.	.
Template Conservation																																																														.	.	.
Template Sequence		E	A	F	D	L	D	P	R	S	V	S	G	Y	N	L	G	E	H	G	N	S	Q	F	V	A	W	S	T	V	R	V	M	G	Q	P	I	V	T	L	I	D	L	A	A	I	E	E	E	A	R	K	G	G	F	T	V	L	N	G	K	.	.	.	G	Y	T	S	Y	G	V	A	T	S	A	I	R	I	A	K	A
Template Known Secondary structure					T			G	G	G		B					B		T	T	T	T					T	T	T				T	T			G	G	G																							.	.	.	S	S
Template Predicted Secondary structure																																																														.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D	I	A	L	G	E	E	F	V
Query Conservation
Alig confidence				.	.	.	.																.																							.
Template Conservation				.	.	.	.																.																							.
Template Sequence		V	M	.	.	.	.	A	D	A	H	A	E	L	V	V	S	N	R	R	D	D	.	M	G	M	Y	L	S	Y	P	A	I	I	G	R	D	G	V	L	A	E	T	T	L	.	D	L	T	T	D	E	Q	E	K	L	L	Q	S	R	D	Y	I	Q	Q	R	F	D	E	I	V	D	T	L
Template Known Secondary structure				.	.	.	.	T	T												T	T	.	T		S										T	T									.																										T	T
Template Predicted Secondary structure				.	.	.	.																.																							.
Template SS confidence
		263	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions