Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 27 Aligned Residues 280 % Identity 26% Template c1gv1D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: structural basis for thermophilic protein stability:2 structures of thermophilic and mesophilic malate3 dehydrogenases Resolution 2.5 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.																									.
Query SS confidence																																						.																									.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	E	L	S	L	Y	D	I	A	.	P	V	T	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	.	E	D	A	T	P	A	L	E	G	A	D	V	V	L	I	S	A	G
Query Conservation																																						.																									.
Alig confidence									.																.													.																									.
Template Conservation									.																.
Template Sequence		M	K	I	T	V	I	G	.	A	G	N	V	G	A	T	T	A	F	R	I	A	D	K	.	K	L	A	R	E	L	V	L	L	D	V	V	E	G	I	P	Q	G	K	G	L	D	M	Y	E	T	G	P	V	G	L	F	D	T	K	I	T	G	S	N	D	Y	A	D	T	A	D	S	D	I	V	I	I	T	A	G
Template Known Secondary structure									.		S													T	.	T			S							S	S	S	S											T	T					T									S		G	G	G	S	T	T		S
Template Predicted Secondary structure									.																.
Template SS confidence
		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		V	A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	.	V	T	T	L	D	I	I	R	S	N	T	F
Query Conservation																																																																					.
Alig confidence			.	.	.	.	.	.	.	.	.	.																																									.	.	.	.													.
Template Conservation			.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	.	.	.	L	L	M	K	N	A	G	I	V	K	E	V	T	D	N	I	M	K	H	S	K	N	P	I	I	I	V	V	S	N	P	L	D	I	M	T	H	V	A	W	.	.	.	.	V	R	S	G	L	P	K	E	R	V	I	G	M	A	G	V	L	D	A	A	R	F	R	S	F
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.																		T	T		S	S								S	S										.	.	.	.				T			G	G	G
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template SS confidence
		79											80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																.								.	.	.	.
Query SS confidence																																.								.	.	.	.
Query Sequence		V	A	E	L	K	G	K	Q	P	G	E	V	E	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	F	.	.	.	.	T	E	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S	A	T	L	S	M	G	Q	A	A	A
Query Conservation																																.								.	.	.	.
Alig confidence																																.								.	.	.	.																								.
Template Conservation																																																																			.
Template Sequence		I	A	M	E	L	G	V	S	M	Q	D	I	N	A	C	V	L	G	G	H	G	D	A	M	V	P	V	V	K	Y	T	T	V	A	G	I	P	I	S	D	L	L	P	A	E	T	I	D	K	L	V	E	R	T	R	N	G	G	A	E	I	V	E	H	L	.	K	Q	G	S	A	F	Y	A	P	A	S	S	V	V
Template Known Secondary structure										G	G	G	B								S	G	G	G					G	G	G				T	T			G	G	G	T	S														T										.	S	S	S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	.	.	.	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T	L	K	K	D
Query Conservation																															.	.	.
Alig confidence									.	.	.	.																			.	.	.																					.
Template Conservation									.	.	.	.																																										.
Template Sequence		E	M	V	E	S	I	V	.	.	.	.	L	D	R	K	R	V	L	P	C	A	V	G	L	E	G	Q	Y	G	I	D	K	T	F	V	G	V	P	V	K	L	G	R	N	G	V	E	Q	I	Y	E	I	.	N	L	D	Q	A	D	L	D	L	L	Q	K	S	A	K	I	V	D	E	N
Template Known Secondary structure									.	.	.	.		T													S	G	G	G														T	T									.																				T
Template Predicted Secondary structure									.	.	.	.																																										.
Template SS confidence
		234	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions