Job Description P61889 Confidence 100.00% Date Thu Jan 5 12:07:26 GMT 2012 Rank 8 Aligned Residues 301 % Identity 24% Template c1b8vA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: malate dehydrogenase from aquaspirillum arcticum Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																														.	.	.	.												.	.	.	.	.
Query SS confidence																														.	.	.	.												.	.	.	.	.
Query Sequence		M	K	V	A	V	L	G	A	A	G	G	I	G	Q	A	L	A	L	L	L	K	T	Q	L	P	S	G	S	.	.	.	.	E	L	S	L	Y	D	I	A	P	V	T	.	.	.	.	.	P	G	V	A	V	D	L	S	H	I	P	T	A	V	K	I	K	G	F	S	G	E	D	A	T	P	A	L	E	G	A	D
Query Conservation																														.	.	.	.												.	.	.	.	.
Alig confidence																														.	.	.	.												.	.	.	.	.
Template Conservation
Template Sequence		M	R	V	A	V	T	G	A	A	G	Q	I	C	Y	S	L	L	F	R	I	A	N	G	D	M	L	G	K	D	Q	P	V	I	L	Q	L	L	E	I	P	N	E	K	A	Q	K	A	L	Q	G	V	M	M	E	I	D	D	C	A	F	P	L	L	A	G	M	T	A	H	A	D	P	M	T	A	F	K	D	A	D
Template Known Secondary structure								S	T	T	S												T	T	T	T	T		T	T											S																	T	T	T		T	T								S						T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		V	V	L	I	S	A	G	V	A	R	K	P	G	M	D	R	S	D	L	F	N	V	N	A	G	I	V	K	N	L	V	Q	Q	V	A	K	T	C	.	P	K	A	C	I	G	I	I	T	N	P	V	N	T	T	V	A	I	A	A	E	V	L	K	K	A	G	V	Y	D	K	N	K	L	F	G	V	T	T	L	D
Query Conservation																																								.
Alig confidence																																								.																				.	.	.
Template Conservation																																																												.	.	.
Template Sequence		V	A	L	L	V	G	A	R	P	R	G	P	G	M	E	R	K	D	L	L	E	A	N	A	Q	I	F	T	V	Q	G	K	A	I	D	A	V	A	S	R	N	I	K	V	L	V	V	G	N	P	A	N	T	N	A	Y	I	A	.	.	.	M	K	S	A	P	S	L	P	A	K	N	F	T	A	M	L	R	L	D
Template Known Secondary structure													T	T																									S		T	T							S	S	S									.	.	.			T		T	T	S		G	G	G
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.							.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																						.																		.										.	.	.	.	.	.
Query SS confidence																						.																		.										.	.	.	.	.	.
Query Sequence		I	I	R	S	N	T	F	V	A	E	L	K	G	K	Q	P	G	E	V	E	.	V	P	V	I	G	G	H	S	G	V	T	I	L	P	L	L	S	.	Q	V	P	G	V	S	F	T	E	.	.	.	.	.	.	Q	E	V	A	D	L	T	K	R	I	Q	N	A	G	T	E	V	V	E	A	K	A	G	G	G	S
Query Conservation																						.																		.										.	.	.	.	.	.
Alig confidence																						.																		.										.	.	.	.	.	.																						.	.	.
Template Conservation																																																																													.	.	.
Template Sequence		H	N	R	A	L	S	Q	I	A	A	K	T	G	K	P	V	S	S	I	E	K	L	F	V	W	G	N	H	S	P	T	M	Y	A	D	Y	R	Y	A	Q	I	D	G	A	S	V	K	D	M	I	N	D	D	A	W	N	R	D	T	F	L	P	T	V	G	K	R	G	A	A	I	I	D	A	R	.	.	.	G	V
Template Known Secondary structure														T			G	G	G			S					B		S	S	T	T						S	S				T	T																T																	.	.	.	S	S
Template Predicted Secondary structure																																																																													.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		A	T	L	S	M	G	Q	A	A	A	R	F	G	L	S	L	V	R	A	L	Q	G	E	Q	G	V	V	E	C	A	Y	V	E	G	D	G	Q	Y	A	.	.	.	.	R	F	F	S	Q	P	L	L	L	G	K	N	G	V	E	E	R	K	S	I	G	T	L	S	A	F	E	Q	N	A	L	E	G	M	L	D	T
Query Conservation																																									.	.	.	.
Alig confidence												.	.																												.	.	.	.																					.
Template Conservation												.	.																																																				.
Template Sequence		S	S	A	A	S	A	A	N	A	A	.	.	I	D	H	I	H	D	W	V	L	G	T	A	G	K	W	T	T	M	G	I	P	S	D	G	S	Y	G	I	P	E	G	V	I	F	G	F	P	V	T	T	E	N	G	E	Y	K	I	V	Q	G	L	.	S	I	D	A	F	S	Q	E	R	I	N	V	T	L	N	E
Template Known Secondary structure												.	.												T	T											S	G	G	G			T	T											T	T									.
Template Predicted Secondary structure												.	.																																																				.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	K	D	I	A	L	G	E	E	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	E	E	Q	N	G	V	Q	H	L	L
Template Known Secondary structure								T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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