Job Description Q47152 Confidence 99.90% Date Thu Jan 5 12:36:27 GMT 2012 Rank 3 Aligned Residues 116 % Identity 14% Template c2vhgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:transposase orfa; PDBTitle: crystal structure of the ishp608 transposase in complex2 with right end 31-mer dna Resolution 2.9 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	E	Y	R	R	Y	Y	I	K	G	G	T	W	F	F	T	V	N	L	R	N	R	R	S	Q	L	L	T	T	Q	Y	Q	M	L	R	H	A	I	I	K	V	K	R	D	R	P	F	E	I	N	A	W	V	V	L	P	E	H	M	H	C	I	W	T	L	P	E	G	D	D	D	F	S	S	R	W	R	E	I
Query Conservation
Alig confidence																																																																							.
Template Conservation																																																																							.
Template Sequence		L	Y	K	S	N	H	N	V	V	Y	S	C	K	Y	H	I	V	W	C	P	K	Y	R	R	K	V	L	V	G	A	V	E	M	R	L	K	E	I	I	Q	E	V	A	K	E	L	R	V	E	I	I	E	M	Q	T	D	K	D	H	I	H	I	L	A	D	I	D	P	S	.	F	G	V	M	K	F	I	K	T	A
Template Known Secondary structure						S	S	S													B	G	G	G																							T	T										T	T										T	T	.	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.
		81	.	.	.	.	.	.	.	.	90										.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.
Query Sequence		K	K	Q	F	T	H	A	C	G	L	.	.	.	.	.	.	.	.	.	K	N	I	W	Q	P	R	F	W	E	H	A	I	R	N	T	K	D	Y	R	H	H	V	D	Y	I	Y	I
Query Conservation												.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.														.
Template Conservation																																		.
Template Sequence		K	G	R	S	S	R	I	L	R	Q	E	F	N	H	L	K	T	K	L	P	T	L	W	T	N	S	C	F	I	S	T	V	.	G	G	A	P	L	N	V	V	K	Q	Y	I	E	N
Template Known Secondary structure														T					S		S	S	S	B		S								.					T	T	T							T
Template Predicted Secondary structure																																		.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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