Job Description P62615 Confidence 100.00% Date Thu Jan 5 12:07:40 GMT 2012 Rank 17 Aligned Residues 261 % Identity 16% Template c3k85B_ PDB info PDB header:transferase Chain: B: PDB Molecule:d-glycero-d-manno-heptose 1-phosphate kinase; PDBTitle: crystal structure of a d-glycero-d-manno-heptose 1-phosphate2 kinase from bacteriodes thetaiotaomicron Resolution 2.28 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.													.	.	.	.	60	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	W	P	S	P	A	K	L	N	L	F	L	Y	I	T	G	Q	R	A	D	G	Y	H	.	.	.	.	.	.	T	L	Q	T	L	F	Q	F	L	D	Y	G	D	T	I	S	I	E	L	R	D	D	G	D	I	R	L	L	T	.	.	.	.	.	.	.	.	.	.	.	.	P	V	E	G	V	E	H	E	D
Query Conservation																										.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.						.			.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.						.
Template Sequence		V	R	S	K	A	P	L	R	L	G	L	A	.	.	.	.	G	G	G	S	D	.	V	S	P	Y	S	D	I	Y	G	G	L	I	L	N	A	T	I	N	L	Y	A	Y	C	T	I	E	E	T	N	S	G	R	I	E	I	N	A	Y	D	A	Q	C	C	K	S	Y	L	S	X	S	Q	L	E	I	D	G	E	A
Template Known Secondary structure														.	.	.	.		T	T	T	T	.	S	T	T																										S	S	S							G	G	G	T									S	S					S	S	S
Template Predicted Secondary structure														.	.	.	.						.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		N	L	I	V	R	A	A	R	L	L	M	K	T	A	A	D	S	G	R	L	P	T	G	S	G	A	N	I	S	I	D	K	R	L	P	M	G	G	G	L	G	G	G	S	S	N	A	A	T	V	L	V	A	L	N	H	L	W	Q	C	G	L	S	M	D	E	L	A	E	M	G	L	T	L	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																			.	.	.	.	.																																																					.	.	.	.	.	.
Template Conservation																			.	.	.	.	.
Template Sequence		S	L	I	K	G	V	Y	N	R	I	I	R	D	Y	R	L	E	.	.	.	.	.	P	K	S	F	K	I	T	T	Y	N	D	A	P	A	G	S	G	L	G	T	S	S	T	X	V	V	C	I	L	K	A	F	I	E	W	L	S	L	P	L	G	D	Y	E	T	S	R	L	A	Y	E	I	E	R	K	D	L	G
Template Known Secondary structure																T			.	.	.	.	.											S	S		S	S	T	T	S																			T																		T	T	T
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.						.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
					139	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.	.	.			.																			.	.	.													.
Query SS confidence		.	.	.			.																			.	.	.													.
Query Sequence		.	.	.	G	A	.	D	V	P	V	F	V	R	G	H	A	A	F	A	E	G	V	G	E	.	.	.	I	L	T	P	V	D	P	P	E	K	W	Y	.	L	V	A	H	P	G	V	S	I	P	T	P	V	I	F	K	D	P	E	L	P	R	N	T	P	K	R	S	I	E	T	L	L	K	C	E	F	S	N	D
Query Conservation		.	.	.			.																			.	.	.													.
Alig confidence		.	.	.			.																			.	.	.													.
Template Conservation
Template Sequence		L	S	G	G	K	Q	D	Q	Y	A	A	A	F	G	G	F	N	Y	X	E	F	L	Q	N	D	L	V	I	V	N	P	L	K	X	K	R	W	I	V	D	E	L	E	S	S	X	V	L	Y	F	T	Q	T	A	I	E	A	X	H	K	I	K	Q	S	A	I	D	T	K	L	A	L	L	K	G	D	V	G	E	F
Template Known Secondary structure						S										S								T	T	T																				T																													T	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		C	E	V	I	A	R	K	R	F	R	E	V	D	A	V	L	S	W	L	L	E	Y	A	P	.	.	S	R	L	T	G	T	G	A	C	V	F	A	E	F	D	T	E	S	E	A	R	Q	V	L	E	Q	A	P	E	W	L	N	G	F	V	A	K	G	A	N	L	S	P
Query Conservation																										.	.
Alig confidence																										.	.														.	.															.	.
Template Conservation																																									.	.															.	.
Template Sequence		A	R	I	L	G	E	G	W	E	N	K	K	K	E	A	F	D	V	A	T	G	A	G	A	X	A	G	K	V	S	G	A	G	F	I	X	F	V	V	.	.	E	P	T	R	K	E	E	V	V	R	A	L	N	N	.	.	L	N	G	F	V	X	P	F	Q	F	I	D
Template Known Secondary structure												T	T				S						T			S															.	.															.	.	S	S	S							B
Template Predicted Secondary structure																																									.	.															.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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