Job Description P62615 Confidence 100.00% Date Thu Jan 5 12:07:40 GMT 2012 Rank 15 Aligned Residues 258 % Identity 15% Template c3k17A_ PDB info PDB header:transferase Chain: A: PDB Molecule:lin0012 protein; PDBTitle: crystal structure of a lin0012 protein from listeria innocua Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.												.	.	.	.	.	.	.	.
Predicted Secondary structure																										.																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	Q	W	P	S	P	A	K	L	N	L	F	L	Y	I	T	G	Q	R	A	D	G	Y	.	H	T	L	Q	T	L	F	Q	F	L	D	Y	G	D	T	I	S	I	E	L	R	D	D	G	D	I	R	L	L	T	P	V	E	G	V	E	.	.	.	.	.	.	.	.	.	.	.	H	E	D	N	L	I	V	R
Query Conservation																										.																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.						.		.																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.						.
Template Sequence		K	L	Q	V	K	I	P	G	K	L	Y	V	A	.	.	.	.	G	E	Y	A	V	.	V	E	S	G	H	T	A	I	L	T	A	V	N	R	Y	I	T	L	T	L	E	D	S	E	R	N	E	L	W	I	P	H	Y	E	N	P	V	S	W	P	I	G	G	E	L	K	P	D	G	E	H	W	T	F	T	A	E
Template Known Secondary structure															.	.	.	.		T	T	G	G	.	G	S	T	T																				S	S						T	T		S	S		B				T	T	S					S		G	G	G
Template Predicted Secondary structure															.	.	.	.						.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20					.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.																																																			.	.	.	.	.	.	.	.	.
Query Sequence		A	A	R	L	L	M	K	T	A	A	D	S	G	R	L	P	T	G	S	.	.	G	A	N	I	S	I	D	K	R	L	P	M	G	G	G	L	G	G	G	S	S	N	A	A	T	V	L	V	A	L	N	H	L	W	Q	C	G	L	S	M	D	E	L	A	E	M	G	L	T	L	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.																																																			.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	N	I	A	T	T	F	L	K	S	E	G	I	E	L	T	P	V	K	X	V	I	E	T	E	L	I	D	Q	S	G	A	K	Y	G	L	G	S	S	A	A	A	T	V	A	V	I	N	A	L	X	T	K	F	Y	P	E	I	S	X	L	K	K	F	K	L	A	A	L	S	H	L	V	V	Q	G	N	G	S
Template Known Secondary structure													T	T													S	S	B		T	T	S		B		S	S																				T	T	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.																								.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	D	V	P	V	F	V	R	G	H	A	A	F	A	E	G	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	L	T	P	V	D	P	P	E	K	W	Y	L	V	A	H	P	G	V	S	I	P	T	P	V	I	F	K	D	P	E	L	P	R	N	T	P
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	G	D	I	A	S	C	X	Y	G	G	W	I	A	Y	T	T	F	D	Q	E	W	V	K	H	R	L	A	Y	K	S	L	E	W	F	X	K	E	P	W	P	X	L	Q	I	E	T	L	E	E	P	V	P	T	F	S	V	G	W	T	G	T	P	V	S	T	G	K	L	V	S	Q	I	H	A	F	K	Q	E	D
Template Known Secondary structure		S										S																	T	T	S								S			T	T										S	S								S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		196	.	.	.	200	.	.	.	.																						.	.	.	.	.	210	.	.	.	.	.	.	.	.										.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.			.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.																	.								.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.																	.								.	.
Query Sequence		K	R	S	I	E	T	L	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	E	F	S	N	D	C	E	V	I	A	R	K	R	.	.	.	.	.	.	.	.	.	F	R	E	V	D	A	V	L	S	W	L	L	E	Y	A	P	.	S	R	L	T	G	T	G	.	.	A
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.																	.								.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.																	.								.	.
Template Conservation
Template Sequence		S	K	N	Y	Q	H	F	L	T	R	N	N	E	I	X	K	Q	I	I	Q	A	F	H	T	K	D	E	E	L	L	Y	S	S	I	K	E	N	R	R	I	L	Q	E	L	G	T	K	A	G	V	N	I	E	T	S	L	L	K	E	L	A	D	S	A	E	N	X	G	G	A	G	K	S	S	G	S	G	G	G	D
Template Known Secondary structure																										T																								T				S														T	T	S						T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	V	F	A	E	F	D	T	E	S	E	A	R	Q	V	L	E	Q	A	P	E	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	G	I	A	F	S	K	T	K	E	L	A	E	K	L	V	N	E	W	E	K	L
Template Known Secondary structure								S	S														T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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