Job Description P62615 Confidence 100.00% Date Thu Jan 5 12:07:40 GMT 2012 Rank 18 Aligned Residues 266 % Identity 20% Template c2r42A_ PDB info PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: the biochemical and structural basis for feedback2 inhibition of mevalonate kinase and isoprenoid metabolism Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	T	Q	W	P	S	P	A	K	L	N	L	F	L	Y	I	T	G	Q	R	A	D	G	Y	H	T	L	Q	T	L	F	Q	F	L	D	Y	G	D	T	I	S	I	E	L	R	D	D	G	D	I	R	L	L	T	P	V	E	G	V	E	H	E	D	N	L	I	V	R	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.						.																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.						.
Template Sequence		E	V	L	L	V	S	A	P	G	K	V	I	L	H	.	.	.	.	G	E	H	A	V	.	V	H	G	K	V	A	L	A	V	A	L	N	L	R	T	F	L	V	L	R	P	Q	S	N	G	K	V	S	L	N	L	P	N	V	G	I	K	Q	V	W	D	V	A	T	L	Q	L	L	D	T	G	F	Q	L	E	K
Template Known Secondary structure		S														.	.	.	.		T	T	T	T	.	T	T	T																				S	S	S						B	T	T	T	T	B											T									T
Template Predicted Secondary structure																.	.	.	.						.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.					.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
																				70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	R	L	L	M	K	T	A	A	D	S	G	R	L	P	T	G	S	G	A	N	I	S	I	D	K	R	L	P	M	G	G	G	L	G	G	G	S	S	N	A	A	T	V	L	V	A	L	N	H	L	W	Q	C	G	L	S	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.
Template Conservation
Template Sequence		L	K	K	V	A	G	L	P	R	D	C	V	G	N	E	G	L	S	L	L	A	F	L	Y	L	Y	L	A	I	C	R	K	Q	R	T	L	P	S	L	D	I	M	V	W	S	E	L	P	P	G	A	G	L	G	S	S	A	A	Y	S	V	C	V	A	A	A	L	L	T	A	C	E	E	V	T	N	P	L	K	D
Template Known Secondary structure								T	T	S				S	T	T																T	T	S	S	S											S	S		T	T	S	S	S																		T	T	S	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
																						128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	D	E	L	A	E	M	G	L	T	L	G	A	D	V	P	V	F	V	R	G	H	A	A	F	A	E	G	V	G	E	I	L	T	P	V	D	P	P	E	K	W	Y	L	V	A	H	P	G	V	S	I	P	T	P	V	I	F	K	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																																																	.
Template Sequence		R	G	S	I	G	S	W	P	E	E	D	L	K	S	I	N	K	W	A	Y	E	G	E	R	V	I	H	G	N	P	S	G	V	D	N	S	V	S	T	W	G	G	A	L	R	Y	Q	.	Q	G	K	M	S	S	L	K	R	L	P	A	L	Q	I	L	L	T	N	T	K	V	P	R	S	T	K	A	L	V	A	G
Template Known Secondary structure				S																									S	S			S										S					S	.	S	S						S
Template Predicted Secondary structure																																																	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																													.	.	.	.	.	210	.	.	.	.	.	.	.	.				.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																.
Query Sequence		P	E	L	P	R	N	T	P	K	R	S	I	E	T	L	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	E	F	S	N	D	C	E	V	I	A	R	K	R	.	.	.	F	R	E	V	D	A	V	L	S	W	L	L	E	Y	A	.	P	S
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																.
Template Conservation
Template Sequence		V	R	S	R	L	I	K	F	P	E	I	M	A	P	L	L	T	S	I	D	A	I	S	L	E	C	E	R	V	L	G	E	M	A	A	A	P	V	P	E	Q	Y	L	V	L	E	E	L	M	D	M	N	Q	H	H	L	N	A	L	G	V	G	H	A	S	L	D	Q	L	C	Q	V	T	A	A	H	G	L	H	S
Template Known Secondary structure									S																										T	T				T																				T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.			.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.
Predicted Secondary structure								.	.										.	.	.														.
Query SS confidence								.	.										.	.	.														.
Query Sequence		R	L	T	G	T	G	.	.	A	C	V	F	A	E	F	D	T	.	.	.	E	S	E	A	R	Q	V	L	E	Q	A	P	E	.	W	L	N	G	F	V	A	K	G
Query Conservation								.	.										.	.	.														.
Alig confidence								.	.										.	.	.														.
Template Conservation
Template Sequence		K	L	T	G	A	G	G	G	G	C	G	I	T	L	L	K	P	G	L	E	R	A	K	V	E	A	A	K	Q	A	L	T	G	C	G	F	D	C	W	E	T	S	I
Template Known Secondary structure					T	T		S	S	S								S	S			T													T	T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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