Job Description P62615 Confidence 100.00% Date Thu Jan 5 12:07:40 GMT 2012 Rank 22 Aligned Residues 253 % Identity 22% Template c2a2cA_ PDB info PDB header:transferase Chain: A: PDB Molecule:n-acetylgalactosamine kinase; PDBTitle: x-ray structure of human n-acetyl galactosamine kinase2 complexed with mg-adp and n-acetyl galactosamine 1-3 phosphate Resolution 1.65 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.											.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.
Query Sequence		W	P	S	P	A	K	L	N	L	F	L	Y	I	T	G	Q	R	A	D	G	Y	H	T	L	Q	T	L	F	Q	F	L	D	Y	G	D	T	I	S	I	E	L	R	D	D	G	D	I	R	L	L	T	.	.	.	.	.	.	.	.	.	.	P	V	E	G	V	E	H	E	D	N	L	I	V	R	A	A	R	L	L
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.						.																																.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.						.
Template Sequence		V	R	A	P	G	R	V	N	I	I	.	.	.	.	G	E	H	I	D	.	Y	C	G	Y	S	V	L	P	M	A	V	E	Q	D	V	L	I	A	V	E	P	V	K	T	Y	A	L	Q	L	A	N	T	N	P	L	Y	P	D	F	S	T	S	A	N	N	I	D	K	T	K	P	L	W	H	N	Y	F	L	C	G
Template Known Secondary structure												.	.	.	.		T	T		G	.	G	G	T			B																	S	S	S							S	S	T	T	S													S	S
Template Predicted Secondary structure												.	.	.	.						.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.					.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.										.	.	140	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	T	A	A	D	S	G	R	L	P	T	G	S	G	A	N	I	S	I	D	K	R	L	P	M	G	G	G	L	G	G	G	S	S	N	A	A	T	V	L	V	A	L	N	H	L	W	Q	C	G	L	S	M	D	E	L	A	E	M	G	L	T	.	.	.	.	.	.	.	.	.	L	G	A	D	V	P	V	F
Query Conservation																																																																	.	.	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	G	I	Q	E	H	F	G	L	S	N	L	T	G	M	N	C	L	V	D	G	N	I	P	P	S	S	G	L	S	S	S	S	A	L	V	C	C	A	G	L	V	T	L	T	V	L	G	R	N	L	S	K	V	E	L	A	E	I	C	A	K	S	E	R	Y	I	G	T	E	G	G	G	M	D	Q	S	I	S
Template Known Secondary structure									T	T			S												S		T	T	S	S	S																			T																	G	G	G	T					S
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		146	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure						.	.	.																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	G	H	.	.	.	A	A	F	A	E	G	V	G	E	I	L	T	P	V	D	P	P	.	E	K	W	Y	L	V	A	H	P	G	V	S	I	P	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.	.																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	A	E	E	G	T	A	K	L	I	E	F	S	P	L	R	A	T	D	V	K	L	P	S	G	A	V	F	V	I	A	N	S	C	V	E	M	N	K	A	A	T	S	H	F	N	I	R	V	M	E	C	R	L	A	A	K	L	L	A	K	Y	K	S	L	Q	W	D	K	V	L	R	L	E	E	V	Q	A	K
Template Known Secondary structure					B	T	T	B						T	T	T	T									T	T														G	G	G	S	S																				T	T			T	T	T
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
																																																																				183	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	F	K	D	P	E	L	P	R	N	T	P	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	I	S	L	E	E	M	L	L	V	T	E	D	A	L	H	P	E	P	Y	N	P	E	E	I	C	R	C	L	G	I	S	L	E	E	L	R	T	Q	I	L	S	P	N	T	Q	D	V	L	I	F	K	L	Y	Q	R	A	K	H	V	Y	S	E	A	A	R	V	L	Q	F	K	K	I	C	E	E	A	P	E
Template Known Secondary structure			T														S		S	S		B										T										T	S		G	G	G	T	T				B																												T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.																.	.									.	.
Query SS confidence																									.	.	.	.																.	.									.	.
Query Sequence		R	S	I	E	T	L	L	K	C	E	F	S	N	D	C	E	V	I	A	R	K	R	F	.	.	.	.	R	E	V	D	A	V	L	S	W	L	L	E	Y	A	P	.	.	S	R	L	T	G	T	G	A	.	.	C	V	F	A	E	F	D	T	E	S	E	A	R	Q	V	L	E	Q	A	P	E	W	L
Query Conservation																									.	.	.	.																.	.									.	.
Alig confidence															.	.									.	.	.	.																.	.									.	.										.
Template Conservation															.	.																																																	.
Template Sequence		N	M	V	Q	L	L	G	E	L	M	N	Q	S	.	.	H	M	S	C	R	D	M	Y	E	C	S	C	P	E	L	D	Q	L	V	D	I	C	R	K	F	G	A	Q	G	S	R	L	T	G	A	G	W	G	G	C	T	V	S	M	V	P	A	D	.	K	L	P	S	F	L	A	N	V	H	K	A	Y
Template Known Secondary structure		T													.	.							T	S																	T	T		S						T	T		S	S	S								G	G	.	G
Template Predicted Secondary structure															.	.																																																	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.		.	.	.	.	420	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions