Job Description P62615 Confidence 100.00% Date Thu Jan 5 12:07:40 GMT 2012 Rank 10 Aligned Residues 264 % Identity 18% Template c1kkhA_ PDB info PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: crystal structure of the methanococcus jannaschii2 mevalonate kinase Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.																	.	60	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	Q	W	P	S	P	A	K	L	N	L	F	L	Y	I	T	G	Q	R	A	D	G	Y	H	T	L	Q	T	L	F	Q	F	L	D	Y	G	D	T	I	S	I	E	L	R	D	D	G	D	I	R	L	L	T	P	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	E	H	E	D	N
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.						.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.						.
Template Sequence		H	M	I	I	E	T	P	S	K	V	I	L	F	.	.	.	.	G	E	H	A	V	.	V	Y	G	Y	R	A	I	S	M	A	I	D	L	T	S	T	I	E	I	K	E	T	Q	E	D	E	I	I	L	N	L	N	D	L	N	K	S	L	G	L	N	L	N	E	I	K	N	I	N	P	N	N	F	G	D	F	K
Template Known Secondary structure															.	.	.	.		T	T	G	G	.	G	G	T																					S	S							T	T	T	T							T	T	T	G	G	G			G	G	G	S	G	G	G
Template Predicted Secondary structure															.	.	.	.						.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.					.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		L	I	V	R	A	A	R	L	L	M	K	T	A	A	D	S	G	R	L	P	T	G	S	G	A	N	I	S	I	D	K	R	L	P	M	G	G	G	L	G	G	G	S	S	N	A	A	T	V	L	V	A	L	N	H	L	W	Q	C	G	L	S	M	D	E	L	A	E	M	G	L	T	L	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																																																						.	.	.	.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		Y	C	L	C	A	I	K	N	T	L	D	Y	L	N	I	E	.	.	.	.	P	K	T	G	F	K	I	N	I	S	S	K	I	P	I	S	C	G	L	G	S	S	A	S	I	T	I	G	T	I	K	A	V	S	G	F	Y	N	K	E	L	K	D	D	E	I	A	K	L	G	Y	M	V	E	K	E	I	Q	G	K
Template Known Secondary structure														T	T			.	.	.	.			S										S		S	S	S	S	S																	T	T	T																				S	S	S
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
				139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.						.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																											.	.	.	.	.																															.	.	.
Query SS confidence		.	.																											.	.	.	.	.																															.	.	.
Query Sequence		.	.	G	A	D	V	P	V	F	V	R	G	H	A	A	F	A	E	G	V	G	E	I	L	T	P	V	D	.	.	.	.	.	P	P	E	K	W	Y	L	V	A	H	P	G	V	S	I	P	T	P	V	I	F	K	D	P	E	L	P	R	N	T	.	.	.	P	K	R	S	I	E	T	L	L	K	C	E	F	S
Query Conservation		.	.																											.	.	.	.	.																															.	.	.
Alig confidence		.	.																											.	.	.	.	.																															.	.	.
Template Conservation
Template Sequence		A	S	I	T	D	T	S	T	I	T	Y	K	G	I	L	E	I	K	N	N	K	F	R	K	I	K	G	E	F	E	E	F	L	K	N	C	K	F	L	I	V	Y	A	E	K	R	K	K	K	T	A	E	L	V	N	E	V	A	K	I	E	N	K	D	E	I	F	K	E	I	D	K	V	I	D	E	A	L	K	I
Template Known Secondary structure				S										S					S	S	S															T													S											T		T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.														.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.																.										.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.																.										.	.
Query Sequence		N	D	C	E	V	I	A	R	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	E	V	D	A	V	L	S	W	L	L	E	Y	A	.	P	S	R	L	T	G	T	G	A	.	.	C	V	F	A	E	F	D	T	E	S	E	A	R	Q	V	L	E	Q	A	P	E	W	L	N	G	F	V	A	K	G
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.																.										.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.																.										.	.
Template Conservation
Template Sequence		K	N	K	E	D	F	G	K	L	M	T	K	N	H	E	L	L	K	K	L	N	I	S	T	P	K	L	D	R	I	V	D	I	G	N	R	F	G	F	G	A	K	L	T	G	A	G	G	G	G	C	V	I	I	L	V	N	E	E	K	E	K	E	L	L	K	E	L	N	K	E	D	V	R	I	F	N	C	R	M
Template Known Secondary structure			S																	T	T	T																	S	S						S	S	S	S	S									G	G	G										T	S	S								B
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		273	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		316	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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