Job Description P62615 Confidence 100.00% Date Thu Jan 5 12:07:40 GMT 2012 Rank 5 Aligned Residues 256 % Identity 20% Template c1fwlD_ PDB info PDB header:transferase Chain: D: PDB Molecule:homoserine kinase; PDBTitle: crystal structure of homoserine kinase Resolution 2.25 Å

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		1	.	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure													.																										.																									.	.
Query SS confidence													.																										.																									.	.
Query Sequence		M	R	T	Q	W	P	S	P	A	K	L	.	N	L	F	L	Y	I	T	G	Q	R	A	D	G	Y	H	T	L	Q	T	L	F	Q	F	L	D	.	Y	G	D	T	I	S	I	E	L	R	D	D	G	D	I	R	L	L	T	P	V	E	G	V	.	.	E	H	E	D	N	L	I	V	R	A	A	R	L	L	M	K
Query Conservation													.																										.																									.	.
Alig confidence													.			.	.	.	.	.			.	.	.				.	.	.								.																									.	.
Template Conservation																.	.	.	.	.			.	.	.				.	.	.
Template Sequence		M	K	V	R	V	K	A	P	C	T	S	A	N	L	.	.	.	.	.	G	V	.	.	.	G	F	D	.	.	.	V	F	G	L	C	L	K	E	P	Y	D	V	I	E	V	E	A	I	D	D	K	E	I	I	I	E	V	D	D	K	N	I	P	T	D	P	D	K	N	V	A	G	I	V	A	K	K	M	I	D
Template Known Secondary structure															T	.	.	.	.	.	T	T	.	.	.		T	T	.	.	.	T																		S	S	S							S	S	T	T	S				T	T	T	S
Template Predicted Secondary structure																.	.	.	.	.			.	.	.				.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.						.	20				.	.	.				.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.										.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.
Query Sequence		T	A	A	D	S	G	R	L	P	T	G	S	G	A	N	I	S	I	D	K	R	L	P	M	G	G	G	L	G	G	G	S	S	N	A	A	T	V	L	V	A	L	N	H	L	W	Q	C	G	L	S	M	D	E	L	A	E	M	G	L	T	L	.	.	.	.	.	.	.	.	.	G	A	D	V	P	V	F	V	R
Query Conservation																																																																.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.
Template Sequence		D	F	N	I	G	.	.	.	.	.	.	K	G	V	K	I	T	I	K	K	G	V	K	A	G	S	G	L	G	S	S	A	A	S	S	A	G	T	A	Y	A	I	N	E	L	F	K	L	N	L	D	K	L	K	L	V	D	Y	A	S	Y	G	E	L	A	S	S	G	A	K	H	A	D	N	V	A	P	A	I	F
Template Known Secondary structure			T	T			.	.	.	.	.	.	S									S	S		T	T	S	S	S																		T	T																			T	T	S	S
Template Predicted Secondary structure							.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.							.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		148	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.																		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure								.												.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.												.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	H	A	A	F	A	.	E	G	V	G	E	I	L	T	P	V	D	.	P	P	E	K	W	Y	L	V	A	H	P	G	V	S	I	P	T	P	V	I	F	K	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	P	R	N	T	P	K	R	S	I	E	T	L	L	K	C	E	F	S
Query Conservation								.												.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.												.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	F	T	M	V	T	N	Y	E	P	L	E	V	L	H	I	P	I	D	F	K	L	D	I	L	I	A	I	P	N	I	S	I	N	T	K	E	A	R	E	I	L	P	K	A	V	G	L	K	D	L	V	N	N	V	G	K	A	C	G	M	V	Y	A	L	Y	N	K	D	K	S	L	F	G	R	Y	M	M	S
Template Known Secondary structure			S							T	T	T	T									S										S											T	S		S																							T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		209	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure				.																								.
Query SS confidence				.																								.
Query Sequence		N	D	.	C	E	V	I	A	R	K	R	F	R	E	V	D	A	V	L	S	W	L	L	E	Y	A	.	P	S	R	L	T	G	T	G	A	C	V	F	A	E	F	D	T	E	S	E	A	R	Q	V	L	E	Q	A	P	E	W	L	N	G	F	V	A	K	G	A	N
Query Conservation				.																								.
Alig confidence				.																								.																			.
Template Conservation																																															.
Template Sequence		D	K	V	I	E	P	V	R	G	K	L	I	P	N	Y	F	K	I	K	E	E	V	K	D	K	V	Y	G	I	T	I	S	G	S	G	P	S	I	I	A	F	P	K	E	E	.	F	I	D	E	V	E	N	I	L	R	D	Y	Y	E	N	T	I	R	T	E	V	G
Template Known Secondary structure				S	S					G	G	G	S	T	T									G	G	G								T	T	S	S	S							G	G	.	G												S	S							B
Template Predicted Secondary structure																																															.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions