Job Description P41065 Confidence 99.85% Date Thu Jan 5 12:01:22 GMT 2012 Rank 1 Aligned Residues 70 % Identity 27% Template c1tjlD_ PDB info PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.												.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	E	A	D	E	A	Y	S	V	T	.	.	.	.	.	.	.	.	.	.	.	E	Q	L	T	M	T	G	I	N	R	I	R	Q	K	I	N	A	H	G	I	P	V	Y	L	C	E	A	C	G	N	P	I	P	E	A	R	R	K	I	F	P	G	V	T	L	C	V	E	C	Q	A	Y	Q	E	R	Q	R	K
Query Conservation													.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																										.	.
Template Sequence		P	D	P	V	D	R	A	A	Q	E	E	E	F	S	L	E	L	R	N	R	D	R	E	R	K	L	I	K	K	I	E	K	T	L	K	K	V	E	D	E	.	.	D	F	G	Y	C	E	S	C	G	V	E	I	G	I	R	R	L	E	A	R	P	T	A	D	L	C	I	D	C	K	T	L	A	E	I	R	E	K
Template Known Secondary structure				G	G	G																																		T	T	.	.			S	B		S	S	S	S		B										T	T			S
Template Predicted Secondary structure																																										.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		71	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	M	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		148	.	150

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions