Job Description P77400 Confidence 100.00% Date Thu Jan 5 12:28:55 GMT 2012 Rank 2 Aligned Residues 394 % Identity 18% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	P	L	G	L	W	N	V	V	S	I	G	I	G	A	M	V	G	A	G	I	F	A	L	L	G	Q	A	A	L	L	M	E	A	S	T	W	V	A	F	A	F	G	G	I	V	A	M	F	S	G	Y	A	Y	A	R	L	G	A	S	Y	P	S	N	G	G	I	I	D	F	F	R	R	G	L	G	N	G	V
Query Conservation
Alig confidence																																					.																																												.
Template Conservation																																					.																																												.
Template Sequence		A	H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	S	G	V	F	L	L	P	A	N	L	A	S	T	G	G	I	.	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y	A	Y	A	R	R	C	F	G	P	F	.
Template Known Secondary structure			S	S													T	T	S	S	S	S	T	T	T					T	T	S	S				.		S																						T	T				S	S		T	T	T	G	G	G	G	T	T				.
Template Predicted Secondary structure																																					.																																												.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	L	A	L	S	L	L	Y	L	L	T	L	A	V	S	I	A	M	V	A	R	A	F	G	A	Y	A	V	Q	F	L	H	E	G	S	Q	E	E	H	L	I	L	L	Y	A	L	G	I	I	A	V	M	T	L	F	N	S	L	S	N	H	A	V	G	R	L	E	V	I	L	V	G	I	K	M	M	I	L	L
Query Conservation
Alig confidence																																						.
Template Conservation																																						.
Template Sequence		L	G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	I	L	K	.	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T	V	L	A	L	I	P	I	V
Template Known Secondary structure												T	T	T	T											T	G	G	G	S	S	S	S					.	S	S	S																			S		S
Template Predicted Secondary structure																																						.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		L	L	I	I	A	G	V	W	S	L	Q	P	A	H	.	.	.	.	I	S	V	S	A	P	P	S	S	G	A	F	F	S	C	I	G	I	T	F	L	A	Y	A	G	F	G	M	M	A	N	A	A	D	K	V	K	D	P	Q	V	I	M	P	R	A	F	L	V	A	I	G	V	T	T	L	L	Y	I	S	L	A
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.
Template Conservation
Template Sequence		G	I	A	V	F	G	W	F	W	F	R	G	E	T	Y	M	A	A	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	R	N	V	P	I	A	T	I	G	G	V	L	I	A	A	V	C	Y	V	L	S	T
Template Known Secondary structure										S			S	S							S		S	S	S						T								S	T	T		T	T	G	G	G					G	G	G	S	S	S																								T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	L	L	S	D	V	S	A	L	E	L	E	K	Y	A	D	T	A	V	A	Q	A	A	S	P	L	L	G	H	V	G	Y	V	I	V	V	I	G	A	L	L	A	T	A	S	A	I	N	A	N	L	F	A	V	F	N	I	M	D	N	M	G	S	E	R	E	L	P	K	L	M	N	K	S	L	W	R	Q	S
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	I	M	G	M	I	P	N	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L	F	P	P	I	F	A	R	V	N	K	A	G	T
Template Known Secondary structure		T				S						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T																T	T	S	S	T	T	T	S	S		S									S	S	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.																						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.									.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.
Query Sequence		T	W	G	N	I	I	V	V	V	L	I	M	L	M	T	A	A	L	.	.	.	.	.	.	.	.	N	L	G	S	L	A	S	V	A	S	A	T	F	L	I	C	Y	L	A	V	F	V	V	A	I	R	L	R	H	D	I	H	A	S	L	P	I	L	I	V	G	T	L	V	M	L	L	V	I	V	G	F	I	Y
Query Conservation																				.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.																																				.	.
Template Conservation																																																															.	.
Template Sequence		P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A	.	.	R	P	A	Y	L	A	V	T	T	I	A	F	L	Y	C	I	W
Template Known Secondary structure																		T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S		.	.
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	W	S	Q	G	S	R	A	L	I	W	I	I	G	S	L	L	L	S	L	I	V	A	M	V	M	K	R	N	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	V	G	S	G	A	K	E	V	M	W	S	F	V	T	L	M	V	I	T	A	M	Y	A	L	N	Y	N	R	L	H
Template Known Secondary structure					S	S																		T	T	T	S						S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.