Job Description P77400 Confidence 9.55% Date Thu Jan 5 12:28:55 GMT 2012 Rank 10 Aligned Residues 213 % Identity 11% Template c2wwbA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome Resolution 6.48 Å

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		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		G	M	M	A	N	A	A	D	K	V	K	D	P	Q	V	I	M	P	R	A	.	F	L	V	A	I	G	V	T	T	L	L	Y	I	S	L	A	L	V	L	L	S	D	V	S	A	L	E	L	E	K	Y	A	D	T	A	V	A	Q	A	A	S	P	L	L	G	H	V	G	Y	V	I	V	V	I	G	A	L	L	A
Query Conservation																						.
Alig confidence																						.															.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		K	P	F	C	V	I	L	P	E	I	Q	K	P	E	R	K	I	Q	F	K	E	K	V	L	W	T	A	I	T	L	F	I	F	L	V	.	.	.	.	.	C	C	Q	I	P	L	F	G	I	M	S	S	D	S	A	D	P	F	Y	W	M	R	V	I	L	A	S	N	R	G	T	L	M	E	L	G	I	S	P	I
Template Known Secondary structure								S																													.	.	.	.	.				S				S	S	S	T	T	T		S												S	S		S	S	S		S	S	S	S	T
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.						.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	S	A	I	N	A	N	L	F	A	V	F	N	I	M	D	N	M	G	S	E	R	E	L	P	K	L	M	N	K	S	L	W	R	Q	S	T	W	G	N	I	I	V	V	V	L	I	M	L	M	T	A	A	L	N	L	G	S	L	A	S	V	A	S	A	T	F	L	I	C	Y	L	A	V	F	V	V	A	I
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence		V	T	S	G	L	I	M	Q	L	L	A	G	A	K	I	I	E	V	G	.	D	T	P	K	D	R	A	L	F	N	G	A	Q	K	L	F	G	M	I	I	T	I	G	Q	S	I	V	Y	V	M	T	G	M	Y	G	D	P	S	E	M	G	A	G	I	C	L	L	I	T	I	Q	L	F	V	A	G	L	I	V	L
Template Known Secondary structure																		S			.	S	S	S	S		S	S																									T	S	S			S	S		S
Template Predicted Secondary structure																					.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.																																										.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	R	H	D	I	H	A	S	L	P	I	L	I	V	G	T	L	V	M	L	L	V	I	V	G	F	I	Y	S	L	W	S	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	A	L
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	D	E	L	L	Q	K	G	Y	G	L	G	S	G	I	S	L	F	I	A	T	N	I	C	E	T	I	V	W	K	A	F	S	P	T	T	V	N	T	G	R	G	M	E	F	E	G	A	I	I	A	L	F	H	L	L	A	T	R	T	D	K	V	R	A	L	R	E	A	F	Y	R	Q	N	L	P	N	L	M
Template Known Secondary structure									T	T	T		S	S		S																		T			S	S		S				S			T	T	T	T											T		T	T	S	S	S	S	S	S		S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	I	I	G	S	L	L	L	S	L	I	V	A	M	V	M	K	R	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	I	A	T	I	F	V	F	A	V	V	I	Y	F	Q	G	F	R	V	D
Template Known Secondary structure																					B
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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