 |
Job Description | P0AD14 | Confidence | 97.48% | Date | Thu Jan 5 11:19:40 GMT 2012 |
Rank | 51 | Aligned Residues | 80 |
% Identity | 11% | Template | c3lnuA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:topoisomerase iv subunit b; |
PDBTitle: crystal structure of pare subunit
|
Resolution | 2.20 Å |
|
 |
  |   |
463 | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | P | A | F | T | L | Q | P | I | V | E | N | A | I | K | H | G | T | S | Q | L | L | D | T | G | R | V | A | I | S | A | R | R | E | G | Q | H | L | M | L | E | I | E | D | N | A | G | L | Y | Q | P | V | T | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | S | G | L | G | M | N | L | V | D | K | R | L | R | E |
Query Conservation |   |
  |
|   |   |   |
|   |
|
|
|   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|   |
|
|   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
|
|   |   |
|   |   |
|
|
|   |
|
|
|
|
|   |   |   |
| . | . |   |   |   |   |
|   |
|   |
|   |   |
|
|   | . | . | . |
|   |
|   |
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|   |   |   |   |
|
|
|
|   | . |
Template Sequence |   |
R | P | N | H | L | A | Q | E | V | I | D | N | S | V | D | E | A | L | A | G | . |
. |
H | A | K | Q | I | E | V | T | L | Y | K | D | G | S | . |
. |
. |
C | E | V | S | D | D | G | R | G | M | P | V | D | I | H | P | E | E | K | I | P | G | V | E | L | I | L | T | R | L | G | V | S | V | V | N | A | L | S | T | . |
Template Known Secondary structure |   |
S | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . | S |
|
|  |  |  |  |  |  |
| T | T | S |
| . | . | . |  |  |  |  |  |
| S | S |
|
|
|
| S | B |
| T | T | T |
| S | B |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  | T |  |  | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |  |  |  |
|
|
|  | . | . | . |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | |
|
. | . | . | . | . | 100 | . | . | . | . | . | . | . | . | |
|
|
. | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | |
  |
  |   |
532 | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | F | G | D | D | Y | G | I | S | V | A | C | E | P | D | S | Y | T | R | I | T | L | R | L |
Query Conservation |   |
  |
|
|   |   |   |   |
|   |
|   |
|   |   |
|   |
|
|   |
|   |
|   |
|
Alig confidence |   |
. | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . |   |   |   |
|   |   |   |
|   | . |
|   |   |   |   |   |   |
|
Template Sequence |   |
. |
. |
. |
. |
. |
. |
K | V | E | L | F | I | K | R | E | . |
G | S | E | H | R | M | E | F |
Template Known Secondary structure |   |
. | . | . | . | . | . |  |  |  |  |  |  |  |  | T | . | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . |  |  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
169 | 170 | . | . | . | . | . | . | . | |
. | . | 180 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|