Return to main results Retrieve Phyre Job Id

Job DescriptionP0AD14
Confidence99.85%DateThu Jan 5 11:19:40 GMT 2012
Rank14Aligned Residues144
% Identity13%Templatec3jz3B_
PDB info PDB header:transferaseChain: B: PDB Molecule:sensor protein qsec; PDBTitle: structure of the cytoplasmic segment of histidine kinase qsec
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   395....400.........410.... .....420.........430.........440.........450.........460.........470.
Predicted Secondary structure  ...
















Query SS confidence 



















. . .
























































Query Sequence  IRRDSEQASQLVQYLSTFFR. . . KNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQQLPAFTLQPI
Query Conservation 
    

   

  
    
...           
   
  
   
          
 
             
   
 

Alig confidence 



















...






























..























Template Conservation 
     

  

  

   
 
          
 
  

               ..
 
          
  
   
  
Template Sequence  LHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVXDIYHTAQQAK. . IDVRLTLNAHSIKRTGQPLLLSLL
Template Known Secondary structure  TT


STT
TT
TT..
S

S

Template Predicted Secondary structure 










..




Template SS confidence 















































































   279280.........290.........300.........310.........320.........330.. .......340.........350......
 
   472.......480.........490.........500.........510.........520.........530.........540.........550.
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  VENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRI
Query Conservation 
 


 

         
 
          
 
 


 

  
  





      
   

    
 
 
  
 

 
Alig confidence 

























....








..........













...













Template Conservation 
 


 

 
       
 
      ....
 
 
 
 
..........

 
   
    

... 
   
    
   
Template Sequence  VRNLLDNAVRYSPQGSVVDVTLNADN. . . . FIVRDNGPG. . . . . . . . . . GLSIVQRIAKLHGX. . . NVEFGNAEQGGFEA
Template Known Secondary structure  S

TT

SS....
SS

..........


TT
...
TTSS
Template Predicted Secondary structure 




....







..........



...



Template SS confidence 















































































   357..360.........370.........380.. .......390. ........400..... ....410.........
 
   552.....
Predicted Secondary structure 

Query SS confidence 





Query Sequence  TLRLPW
Query Conservation   
 

 
Alig confidence 





Template Conservation   
  
 
Template Sequence  KVSWLE
Template Known Secondary structure 


Template Predicted Secondary structure 

Template SS confidence 





   446...450.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions