Return to main results Retrieve Phyre Job Id

Job DescriptionP0AD14
Confidence99.93%DateThu Jan 5 11:19:40 GMT 2012
Rank8Aligned Residues314
% Identity8%Templatec3a0rA_
PDB info PDB header:transferaseChain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   239240.........250.........260....... ..270.........280.........290.........300.........310..
Predicted Secondary structure 








......















Query SS confidence 




























. . . . . .












































Query Sequence  LYQELDIGAVAITDREKLLAFTGIGDDHH. . . . . . LPGKPISSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLV
Query Conservation 
          
                 ......                                             
Alig confidence 




























......












































Template Conservation 
 
    

 
 
  
 
   
 
   
 
   




     
                                    
Template Sequence  ILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVFLNFYKFGERYFNIRF
Template Known Secondary structure  SGGGSSSSSSB
S
B
S

STTTTT
BSTTSTTTT






BTTB

Template Predicted Secondary structure 























Template SS confidence 















































































   419420.........430.........440.........450.........460.........470.........480.........490........
 
   313......320.........330.........340.........350.........360.........370.........380.........390..
Predicted Secondary structure 















Query SS confidence 















































































Query Sequence  IPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIK
Query Conservation    
                           
   
                                  
 
   
  
 
Alig confidence 



































































.










Template Conservation                                                                      .           
Template Sequence  SPFRNAKTQLLEGVIITIDDVTELYKYEEERKRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKH. LDDPETLKKYI
Template Known Secondary structure 

TTTTSS


STTTTTTTTTTTTS.
S
SS
TT
Template Predicted Secondary structure 


















































.


Template SS confidence 















































































   499500.........510.........520.........530.........540.........550.........560...... ...570.......
 
   393......400.........410.........420.........430.........440.........450.........460.........470..
Predicted Secondary structure 
















Query SS confidence 















































































Query Sequence  AVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQQLPAFTLQPIV
Query Conservation    
    

   

  
    
           
   
  
   
          
 
             
   
 


Alig confidence 























.




























..























Template Conservation                          .                             ..            
           
Template Sequence  NIITNELSRLETIVKEILEYSKER. VLEFTEFNLNELIREVYVLFEEKIRKMNI. . DFCFETDNEDLRVEADRTRIKQVL
Template Known Secondary structure 

.
TTTT
..

S
S


Template Predicted Secondary structure 















.










..










Template SS confidence 















































































   578.580.........590.........600. ........610.........620.........630 .........640.........650....
 
   473......480.........490.........500.........510...... ...520.........530 .........540....
Predicted Secondary structure 

















.......


.



Query SS confidence 











































. . . . . . .













.













Query Sequence  ENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQPVTN. . . . . . . ASGLGMNLVDKRLR. ERFGDDYGISVACE
Query Conservation   


 

         
 
          
 
 


 

  
  .......





      
 .  

    
 
 
 
Alig confidence 











































.......













.



...






Template Conservation   

  

         
          
 
 
 
 
 

       




 




 

  

   


... 
 
 
 
Template Sequence  INLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTLGLSICRKIIEDEHGG. . . KIWTENR
Template Known Secondary structure  TTT
TT

TTS



GGGGTTTSSS






TTT
S...B


Template Predicted Secondary structure 































...
Template SS confidence 















































































   656...660.........670.........680.........690.........700.........710.........720..... ....730..
 
   545....550.........560
Predicted Secondary structure 








Query SS confidence 















Query Sequence  PDSYTRITLRLPWRDE
Query Conservation   
 

 
 
 

    
Alig confidence  .














Template Conservation  .  

 
 
 

    
Template Sequence  . ENGVVFIFEIPKTPE
Template Known Secondary structure  .SSS
TT
Template Predicted Secondary structure  .







Template SS confidence 















   739740.........750...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions