|   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | |
. | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |
|
| . |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | Q | F | I | E | F | A | L | S | K | Q | V | L | K | F | G | E | F | T | L | K | S | G | R | K | S | P | Y | F | F | N | A | . |
G | L | F | N | T | G | R | D | L | A | L | L | G | R | F | Y | A | E | A | L | V | D | S | G | I | E | F | D | L | L | F | G | P | A | Y | K | G | I | P | I | A | T | T | T | A | V | A |
Query Conservation |   |
  |   |
|   |   |   |
|   |   |   |   |
|   |
|   |
|   |
|   |
|   |
|
|   |   |
|   |   |
|
|
|   | . |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |
|
|
|
|   |
|   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |   | . | . | . |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |
|   |   |
|
|   |   |
|
|   |   |
Template Sequence |   |
H | S | L | S | Q | L | L | K | K | N | . |
. |
. |
Y | R | W | Y | S | P | I | F | S | P | R | N | V | P | R | F | A | D | V | S | S | I | T | E | S | P | E | T | L | K | A | I | R | D | F | L | V | E | R | Y | R | T | M | S | P | A | P | T | H | I | L | G | F | D | A | R | G | F | L | F | G | P | M | I | A | V | E |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |  |  |  | . | . | . |
|  |  |  |
| G | G | G | S | S | S | S | S | S |
|  |  |  | T |  |  |  |  | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
| S | S |
|
| S |  |  |  |  |  | T | T | G | G | G | G | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | . | . | . |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
17 | . | . | 20 | . | . | . | . | . | . | |
|
|
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . |
  |
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | A | E | H | H | D | L | D | L | P | Y | C | F | N | R | K | E | A | K | D | H | G | E | G | G | N | L | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | S | A | L | Q | G | R | V | M | L | V | D | D | V | I | T | A | G | T | A | I | R | E | S | M | E | I | I | Q | A | N | G | A |
Query Conservation |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |   |   |
|
|   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   | . | . | . | . | . | . |
|   |
|   |
|
|
|   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|
|   |
|
|   |   |
|
|
|
Template Sequence |   |
L | G | I | . |
. |
. |
. |
. |
. |
P | F | V | L | M | R | K | A | D | K | N | A | G | L | L | I | R | S | E | P | Y | E | K | E | Y | K | E | A | A | P | E | V | M | T | I | R | H | G | S | I | G | K | N | S | R | V | V | L | I | D | D | V | L | A | T | G | G | T | A | L | S | G | L | Q | L | V | E | A | S | G | A |
Template Known Secondary structure |   |
 | T |
| . | . | . | . | . | . |
|  |  |  |  | B |
| G | G | G |
|
| S | S |  |  |  |
|
|
|
|
|
|
| T | T |
|
|
|
|
|
|
|  |  |  | T | T | S | S |
| T | T |
|  |  |  |  |  |  |  |  |  | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
 |
|
| . | . | . | . | . | . |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
94 | . | . | |
|
|
|
|
|
. | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . |
  |
  |   |
146 | . | . | . | 150 | . | . | . | . | . | . | . | . | |
. | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | L | A | G | V | L | I | S | L | D | R | Q | E | . |
R | G | R | G | E | I | S | A | I | Q | E | V | E | R | D | Y | N | C | K | V | I | S | I | I | T | L | K | D | L |
Query Conservation |   |
  |
|   |   |
|   |
|
|
|
|
|   |   | . |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|
|   |   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |
|
|   |   |   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   | . |   |   |   |   |
|   |   |
|
|
|   |   |   |   |   |
Template Sequence |   |
E | V | V | E | M | V | S | I | L | T | I | P | F | L | K | A | A | E | R | I | H | S | T | A | G | G | R | . |
Y | K | N | V | R | F | I | G | L | L | S | E | D | V | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
| G | G | G |
|  |  |  |  |  |  |  | G | G | G | G | T | . | T | T | T |
|
|  |  |  |  |  |  | G | G | G |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
| . |
|
|
|
|
|  |  |  |  |  |
|  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
168 | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | |
. | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . |
  |