Job Description P0AF32 Confidence 4.63% Date Thu Jan 5 11:25:00 GMT 2012 Rank 20 Aligned Residues 156 % Identity 9% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																								.	.	.	.			.
Query SS confidence																																								.	.	.	.			.
Query Sequence		V	F	F	Y	D	I	Y	P	Y	I	C	A	T	V	F	F	L	G	S	W	L	R	Y	D	Y	G	Q	Y	T	W	R	A	S	S	S	Q	M	L	.	.	.	.	D	K	.	R	G	M	V	I	W	S	N	L	F	H	I	G	I	L	G	I	F	F	G	H	L	F	G	M	L	T	P	H	W	M	Y	A	W	F
Query Conservation																																								.	.	.	.			.
Alig confidence																																								.	.	.	.			.
Template Conservation
Template Sequence		L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C
Template Known Secondary structure					T	S																				T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	V	A	A	K	Q	L	M	A	M	V	L	G	G	I	C	G	V	L	T	L	I	G	G	A	G	L	L	W	R	R	L	T	N	Q	R	V	R	A	T	S	T	T	P	D	I	I	I	M	S	I	L	L	I	Q	C	L	L	G	L	S	T	I	P	F	S	A	Q	Y	P	D	G	S	E	M	M	K	L	V
Query Conservation
Alig confidence															.																																																							.	.	.	.	.	.
Template Conservation															.																																																							.	.	.	.	.	.
Template Sequence		M	Q	W	L	F	G	I	P	H	T	L	Q	L	.	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	.	.	.	.	.	.	F	T	D	S	V	G
Template Known Secondary structure			T	T	S	T	T				T				.																	S	S				T	T																																.	.	.	.	.	.
Template Predicted Secondary structure															.																																																							.	.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.							.	.	.	.	290	.
		162	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	W	A	Q	S	I	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	L	M	Y	L	P	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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