Job Description P0AF32 Confidence 18.20% Date Thu Jan 5 11:25:00 GMT 2012 Rank 8 Aligned Residues 156 % Identity 11% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		5	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure												.	.	.																																	.
Query SS confidence												.	.	.																																	.
Query Sequence		L	N	V	F	F	Y	D	I	Y	P	.	.	.	Y	I	C	A	T	V	F	F	L	G	S	W	L	R	Y	D	Y	G	Q	Y	T	W	R	A	S	S	S	Q	M	L	D	K	.	R	G	M	V	I	W	S	N	L	F	H	I	G	I	L	G	I	F	F	G	H	L	F	G	M	L	T	P	H	W	M	Y	A	W
Query Conservation												.	.	.																																	.
Alig confidence												.	.	.																																	.
Template Conservation
Template Sequence		T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A
Template Known Secondary structure								S																		T	T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	P	V	A	A	K	Q	L	M	A	M	V	L	G	G	I	C	G	V	L	T	L	I	G	G	A	G	L	L	W	R	R	L	T	N	Q	R	V	R	A	T	S	T	T	P	D	I	I	I	M	S	I	L	L	I	Q	C	L	L	G	L	S	T	I	P	F	S	A	Q	Y	P	D	G	S	E	M	M	K	L
Query Conservation
Alig confidence																.	.																																																						.	.	.	.	.	.
Template Conservation																.	.																																																						.	.	.	.	.	.
Template Sequence		G	L	S	A	A	N	I	I	E	S	D	W	T	I	.	.	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	.	.	.	.	.	.	L	P	G	S	I
Template Known Secondary structure				T	T	T	S									.	.											T	T	G	G	G	T	T	S			S																								S									.	.	.	.	.	.
Template Predicted Secondary structure																.	.																																																						.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330							.	.	.	.	.
		161	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	W	A	Q	S	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	Y	L	S	N	F	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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