Job Description P0AF32 Confidence 1.55% Date Thu Jan 5 11:25:00 GMT 2012 Rank 79 Aligned Residues 141 % Identity 18% Template c2axtc_ PDB info PDB header:electron transport Chain: C: PDB Molecule:photosystem ii cp43 protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus Resolution 3.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.																								.	.	.	.									.	.
Query SS confidence																																							.	.	.	.	.	.																								.	.	.	.									.	.
Query Sequence		V	F	F	Y	D	I	Y	P	Y	I	C	A	T	V	F	F	L	G	S	W	L	R	Y	D	Y	G	Q	Y	T	W	R	A	S	S	S	Q	M	.	.	.	.	.	.	L	D	K	R	G	M	V	I	W	S	N	L	F	H	I	G	I	L	G	I	F	F	G	.	.	.	.	H	L	F	G	M	L	T	P	.	.
Query Conservation																																							.	.	.	.	.	.																								.	.	.	.									.	.
Alig confidence																																							.	.	.	.	.	.																								.	.	.	.									.	.
Template Conservation
Template Sequence		F	F	V	V	G	V	V	H	L	I	S	S	A	V	L	G	F	G	G	V	Y	H	A	I	R	G	P	E	T	L	E	E	Y	S	S	F	F	G	Y	D	W	K	D	K	N	K	M	T	T	I	L	G	F	H	L	I	V	L	G	I	G	A	L	L	L	V	A	K	A	M	F	F	G	G	L	Y	D	T	W	A
Template Known Secondary structure																								T	T	T	S		S			T	T	T		T	T	T				T	T		T	T																										T	S	S		B			T	T
Template Predicted Secondary structure
Template SS confidence
		5111	.	.	.	.	.	.	.	.	5120	.	.	.	.	.	.	.	.	.	5130	.	.	.	.	.	.	.	.	.	5140	.	.	.	.	.	.	.	.	.	5150	.	.	.	.	.	.	.	.	.	5160	.	.	.	.	.	.	.	.	.	5170	.	.	.	.	.	.	.	.	.	5180	.	.	.	.	.	.	.	.	.	5190
						75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.																					.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Query SS confidence		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Query Sequence		.	.	.	.	H	W	M	Y	A	W	F	L	P	V	A	A	K	Q	L	M	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	G	G	.	.	I	C	G	V	L	T	L	I	G	G	A	G	L	L	W	R	R	L	T	N	Q	R	V	R	A	T	S	T	T	P	D	I
Query Conservation		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Alig confidence		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template Conservation
Template Sequence		P	G	G	G	D	V	R	V	I	T	N	P	T	L	D	P	R	V	I	F	G	Y	L	L	K	S	P	F	G	G	E	G	W	I	V	S	V	N	N	L	E	D	V	V	G	G	H	I	W	I	G	L	I	C	I	A	G	G	I	W	H	I	L	T	T	P	F	G	W	A	R	R	A	F	I	W	S	G	E	A
Template Known Secondary structure		S	S	S	S			B				S				S							G	G	G	S		S	S	S	S	S		S	T	T																												T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		5191	.	.	.	.	.	.	.	.	5200	.	.	.	.	.	.	.	.	.	5210	.	.	.	.	.	.	.	.	.	5220	.	.	.	.	.	.	.	.	.	5230	.	.	.	.	.	.	.	.	.	5240	.	.	.	.	.	.	.	.	.	5250	.	.	.	.	.	.	.	.	.	5260	.	.	.	.	.	.	.	.	.	5270
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	M	S	I	L	L	I	Q	C	L	L	G	L	S	T	I	P	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	S	Y	S	L	G	A	L	S	M	M	G	F	I	A	T	C	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		5271	.	.	.	.	.	.	.	.	5280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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