Job Description P25907 Confidence 6.65% Date Thu Jan 5 11:42:46 GMT 2012 Rank 48 Aligned Residues 38 % Identity 45% Template c3gioA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the tnf-alpha inducing protein (tip2 alpha) from helicobacter pylori Resolution 2.40 Å

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		201	.	.	.	.	.	.	.	.	210																				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	Y	Y	W	G	L	I	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	A	L	K	E	I	F	K	R	S	N	I	R	M	A	G	N	V	C	N	Q	M	K	K	E	A	L
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	P	Y	W	X	L	Q	N	R	S	E	Y	I	T	Q	G	V	D	S	S	H	I	V	D	G	K	K	T	E	E	I	E	K	I	A	T	K	R	A	T	I	R	V	A	Q	N	I	V	H	K	L	K	E	A	Y	L
Template Known Secondary structure		S			G	G	G	S		S					T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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