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Job DescriptionP24173
Confidence98.26%DateThu Jan 5 11:40:47 GMT 2012
Rank22Aligned Residues246
% Identity14%Templatec2xcuC_
PDB info PDB header:transferaseChain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp
Resolution2.42 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  VKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAE
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Template Sequence  VHTASIGEFNTFLPILKELKREHR. ILLTYFSPRAREYLKTKSDFYDCLHPLP. . . . . . . . . . . . . LDNPFSVKRFEELS
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   24.....30.........40....... ..50.........60.........70..... ....80.........
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  NYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAI
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Template Sequence  KPKALIVVEREFWPSLI. IFTKVPKILVNAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKT. . . . . FGAKRVFSCGNLKF
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   90.........100...... ...110.........120.........130.........140......... 150.........160...
 
   166...170.........180.........190.........200.........210. ........220.........230.....
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Query Sequence  AQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGI. . RIKLPWGAPHEEERAKRLAEGFAY. . . . . . . .
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Template Sequence  IC. . . . QKGKGIKLKGEFIVAGSIHTGE. . VEIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENL
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   164. ....170.........180....... ..190.........200.........210.........220.........230.......
 
   236...240.........250...... ...260 ....... ..270.......
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Query Sequence  . VEVLPKMSLEGVARVLAGAKF. VVSV. . . DTGLSHL. . TAALDRPNIT
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Template Sequence  EGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIY
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   238.240.........250.........260.........270.........280......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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