Job Description P18471 Confidence 19.73% Date Thu Jan 5 11:36:58 GMT 2012 Rank 2 Aligned Residues 47 % Identity 23% Template c3ifuA_ PDB info PDB header:transcription Chain: A: PDB Molecule:non-structural protein; PDBTitle: the crystal structure of porcine reproductive and2 respiratory syndrome virus (prrsv) leader protease nsp1 Resolution 2.42 Å

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		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.					.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		S	M	Y	P	F	N	G	W	V	S	N	E	S	S	P	L	Q	S	S	L	L	V	S	E	R	M	A	F	K	L	H	R	Q	G	M	I	.	.	.	.	M	E	T	I	G	K	N	N	A	V	C	N	E	Y	P
Query Conservation																																						.	.	.	.
Alig confidence																			.	.	.	.																.	.	.	.
Template Conservation																			.	.	.	.
Template Sequence		A	I	F	P	I	A	R	M	T	S	G	N	L	N	F	Q	Q	.	.	.	.	R	M	V	R	V	A	A	E	I	Y	R	A	G	Q	L	T	P	T	V	L	K	T	L	Q	V	Y	E	R	G	C	R	W	Y	P
Template Known Secondary structure		T								T			G	G	G				.	.	.	.													T	S	B								T	T	T	T	T	T	T
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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