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Job DescriptionP0AAF6
Confidence96.85%DateWed Jan 25 15:20:21 GMT 2012
Rank250Aligned Residues109
% Identity21%Templatec1s3sA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50.........60.........70.........80.........90.........100.
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Query Sequence  TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQ
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Template Sequence  AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF. . FLINGPEIMSKLAGES. . . . . . . . . . . . . . . . . . . . . . . . . . .
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STTSST
..TS
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   232.......240.........250.........260...... ...270.........280..
 
   102.......110.........120.........130.........140.........150.........160....... ..170.
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Query Sequence  NLIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEPQVLLFDE. . . . . . . . . . PTAA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE
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STGGGT


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   283......290.........300.........310.........
 
   172.......180.........190 .........200..
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Query Sequence  LDPEITAQIVSIIRELAET. NITQVIVTHEVE
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Template Sequence  VERRIVSQLLTLMDGLKQRAHVIVMAATNRPN
Template Known Secondary structure  T

GGG
S
GG
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   320.........330.........340.........350.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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