Email l.a.kelley@imperial.ac.uk Description P46187 Date Thu Jan 5 12:04:12 GMT 2012 Unique Job ID f7a6a509a710099e

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1u0la1 91.2 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 2 d2z1ca1 87.4 18 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 3 c1u0lB_ 87.1 20 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 4 d2ot2a1 83.0 21 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 5 c3d3rA_ 73.7 26 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 6 d1t9ha1 73.5 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 7 c2jnvA_ 66.1 17 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 8 c2r9vA_ 65.2 12 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution 9 d2jdia2 65.1 18 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 10 d3d3ra1 65.0 26 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 11 d1xhja_ 62.9 25 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 12 c2yv5A_ 61.5 20 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 13 d1skyb2 53.7 12 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 14 c2w6fA_ 52.4 20 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha heart isoform, PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 2. 15 c1kmhA_ 52.0 14 PDB header:hydrolase Chain: A: PDB Molecule:atpase alpha subunit; PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin 16 c2z51A_ 49.6 20 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 2, chloroplast; PDBTitle: crystal structure of arabidopsis cnfu involved in iron-2 sulfur cluster biosynthesis 17 c1w0jB_ 49.2 20 PDB header:hydrolase Chain: B: PDB Molecule:atp synthase alpha chain heart isoform, PDBTitle: beryllium fluoride inhibited bovine f1-atpase 18 d1th5a1 47.9 5 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 19 d1fx0a2 47.9 11 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 20 c2qe7C_ 46.4 16 PDB header:hydrolase Chain: C: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 21 d2nqra1 not modelled 41.9 13 Fold:beta-clip Superfamily:MoeA C-terminal domain-like Family:MoeA C-terminal domain-like 22 d2gy9q1 not modelled 40.2 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 23 c1s1hQ_ not modelled 39.8 19 PDB header:ribosome Chain: Q: PDB Molecule:40s ribosomal protein s11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 24 d2uubq1 not modelled 37.2 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 25 d1i94q_ not modelled 37.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 26 d1uz5a1 not modelled 36.1 21 Fold:beta-clip Superfamily:MoeA C-terminal domain-like Family:MoeA C-terminal domain-like 27 d1xi8a1 not modelled 34.9 21 Fold:beta-clip Superfamily:MoeA C-terminal domain-like Family:MoeA C-terminal domain-like 28 d1te7a_ not modelled 34.8 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:yqfB-like 29 d2do3a1 not modelled 34.6 9 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 30 d1veha_ not modelled 32.6 30 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 31 d1wu2a1 not modelled 32.2 21 Fold:beta-clip Superfamily:MoeA C-terminal domain-like Family:MoeA C-terminal domain-like 32 c2dpyA_ not modelled 30.7 11 PDB header:hydrolase Chain: A: PDB Molecule:flagellum-specific atp synthase; PDBTitle: crystal structure of the flagellar type iii atpase flii 33 c1t9hA_ not modelled 29.9 21 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 34 d1qfja1 not modelled 24.1 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 35 d1d7qa_ not modelled 22.7 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 36 c1i18B_ not modelled 22.3 24 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli 37 c1hzeB_ not modelled 22.3 24 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli 38 c2oqkA_ not modelled 21.4 18 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 39 d1maba2 not modelled 21.2 18 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 40 c3oaaC_ not modelled 20.4 16 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:atp synthase subunit alpha; PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon 41 c3bbnQ_ not modelled 20.3 14 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 42 c1skyE_ not modelled 20.0 19 PDB header:atp synthase Chain: E: PDB Molecule:f1-atpase; PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3 43 d1v43a2 not modelled 19.5 17 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 44 d1kzla2 not modelled 17.8 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 45 c2e6zA_ not modelled 17.5 31 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 46 d1mvfd_ not modelled 17.4 20 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 47 d1rcqa1 not modelled 17.3 26 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Alanine racemase 48 c2rcnA_ not modelled 17.3 23 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 49 d1kzla1 not modelled 16.9 32 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 50 d1rl2a2 not modelled 16.8 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 51 c2l55A_ not modelled 16.7 20 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 52 d1nppa2 not modelled 16.6 15 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 53 d1i8da1 not modelled 16.4 24 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 54 d1udxa3 not modelled 16.3 23 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 55 c2xznQ_ not modelled 16.2 17 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 56 c2l66B_ not modelled 16.0 19 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 57 d1oxxk1 not modelled 15.6 17 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 58 d1nz9a_ not modelled 15.5 15 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 59 d2ftsa1 not modelled 15.4 15 Fold:beta-clip Superfamily:MoeA C-terminal domain-like Family:MoeA C-terminal domain-like 60 c3ah7A_ not modelled 15.0 15 PDB header:metal binding protein Chain: A: PDB Molecule:[2fe-2s]ferredoxin; PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004 61 c2zkqq_ not modelled 14.7 27 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 62 d1h9ra2 not modelled 14.5 17 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 63 c2odoC_ not modelled 14.1 26 PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of pseudomonas fluorescens alanine racemase 64 d1vfsa1 not modelled 14.1 6 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Alanine racemase 65 d2z0sa1 not modelled 13.2 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 66 c2po8A_ not modelled 13.0 29 PDB header:plant protein Chain: A: PDB Molecule:mcoti-ii; PDBTitle: the structure of a two-disulfide intermediate of mcoti-ii 67 d2ba0a1 not modelled 13.0 8 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 68 c1zeqX_ not modelled 12.9 11 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 69 c2d7gD_ not modelled 12.8 18 PDB header:hydrolase Chain: D: PDB Molecule:primosomal protein n; PDBTitle: crystal structure of the aa complex of the n-terminal2 domain of pria 70 c1pkvB_ not modelled 12.7 22 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin 71 c1pkvA_ not modelled 12.7 22 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin 72 d1vqoa2 not modelled 12.7 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 73 d2bs2b2 not modelled 12.6 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 74 c2dgyA_ not modelled 12.5 20 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 75 c2khiA_ not modelled 12.5 13 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 76 d1h9ra1 not modelled 12.4 11 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 77 d1hr0w_ not modelled 12.2 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 78 c2d0sA_ not modelled 12.2 15 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus 79 d1uufa1 not modelled 12.1 29 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 80 c2l1tA_ not modelled 11.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of the n-terminal domain of np_954075.1 81 c1s6wA_ not modelled 11.4 38 PDB header:antibiotic Chain: A: PDB Molecule:hepcidin; PDBTitle: solution structure of hybrid white striped bass hepcidin 82 c2e70A_ not modelled 11.4 15 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 83 c2qf4A_ not modelled 11.1 10 PDB header:structural protein Chain: A: PDB Molecule:cell shape determining protein mrec; PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form) 84 c3iuwA_ not modelled 11.1 18 PDB header:rna binding protein Chain: A: PDB Molecule:activating signal cointegrator; PDBTitle: crystal structure of activating signal cointegrator (np_814290.1) from2 enterococcus faecalis v583 at 1.58 a resolution 85 c2rjgC_ not modelled 10.6 16 PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of biosynthetic alaine racemase from escherichia2 coli 86 d2qamc2 not modelled 10.5 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 87 d2vv5a1 not modelled 10.3 38 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 88 c3a5dB_ not modelled 10.3 11 PDB header:hydrolase Chain: B: PDB Molecule:v-type atp synthase alpha chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase 89 d2etna2 not modelled 10.3 19 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 90 d2awna1 not modelled 10.3 18 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 91 c2e7zA_ not modelled 10.2 29 PDB header:lyase Chain: A: PDB Molecule:acetylene hydratase ahy; PDBTitle: acetylene hydratase from pelobacter acetylenicus 92 c3q87B_ not modelled 10.1 10 PDB header:transferase activator/transferase Chain: B: PDB Molecule:n6 adenine specific dna methylase; PDBTitle: structure of eukaryotic translation termination complex2 methyltransferase mtq2-trm112 93 d1g2914 not modelled 10.1 17 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 94 d2piaa1 not modelled 10.1 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 95 c2etnA_ not modelled 9.8 19 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 96 d1h9ma2 not modelled 9.8 17 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 97 d2q07a1 not modelled 9.7 27 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 98 d2f23a2 not modelled 9.6 19 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 99 d2c34a1 not modelled 9.5 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:ICP-like Family:ICP-like