Return to main results Retrieve Phyre Job Id

Job DescriptionP46187
Confidence91.24%DateThu Jan 5 12:04:12 GMT 2012
Rank1Aligned Residues55
% Identity20%Templated1u0la1
SCOP infoOB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like
Resolution2.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70...
Predicted Secondary structure 


































Query SS confidence 







































































Query Sequence  IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGS
Query Conservation 
 
 
 

 
    
 

  
 


  
 
  


   
            
 
     


 
 
 
 
  
Alig confidence 
































.........




........
















Template Conservation      
 

      
 
   
 
    
  

 .........

   ........  
 


 
        
Template Sequence  LRRRGIVVSFHSNMVTVEDEETGERILCKLRGK. . . . . . . . . FRLQN. . . . . . . . LKIYVGDRVEYTPDETG
Template Known Secondary structure 

TTTTT


GG.........GTTTT........



TT



SS
Template Predicted Secondary structure 











.........


........







Template SS confidence 







































































   3......10.........20.........30..... ....40 .........50.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions