Job Description P23883 Confidence 15.60% Date Thu Jan 5 11:40:20 GMT 2012 Rank 85 Aligned Residues 124 % Identity 16% Template c3ereD_ PDB info PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator Resolution 2.50 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.																																																									.
Query SS confidence															.	.	.	.																																																									.
Query Sequence		R	K	A	V	L	N	K	L	A	D	L	M	E	.	.	.	.	A	H	A	E	E	L	A	L	L	E	T	L	D	T	G	K	P	I	R	H	S	L	R	D	D	I	P	G	A	A	R	A	I	R	W	Y	A	E	A	I	D	K	V	Y	G	E	V	A	T	T	S	S	H	E	L	A	.	M	I	V	R	E	P
Query Conservation															.	.	.	.																																																									.
Alig confidence															.	.	.	.														.											.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																																.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	G	R	Q	A	R	I	V	A	I	L	S	S	A	Q	V	R	S	Q	N	E	L	A	A	L	L	A	A	E	.	G	I	E	V	T	Q	A	T	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	L	E	E	L	G	A	V	K	L	R	G	A	D	G	G	T	G	I	Y	V	V	P	E	D
Template Known Secondary structure															T					S											T	.	T										.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T							T	T	S	S
Template Predicted Secondary structure																																.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.														.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		V	G	V	I	A	A	I	V	P	W	N	F	P	L	L	L	T	C	W	K	L	G	P	A	L	.	A	A	G	N	S	V	I	L	K	P	S	E	K	S	P	L	S	A	I	R	L	A	G	L	A	K	E	A	G	L	P	D	G	V	L	N	V	V	T	G	F	G
Query Conservation																											.
Alig confidence																											.														.	.	.																.
Template Conservation																																									.	.	.																.
Template Sequence		G	S	P	V	R	G	V	S	G	G	T	D	R	M	A	R	L	L	G	E	L	L	V	S	T	D	D	S	G	N	L	A	V	L	R	T	P	P	G	.	.	.	A	A	H	Y	L	A	S	A	I	D	R	A	A	L	P	.	Q	V	V	G	T	I	A	G	D	D
Template Known Secondary structure		S						T	T	T	T																			T	T							S	T	T	.	.	.	T											T	T		T	.	T								S	S
Template Predicted Secondary structure																																									.	.	.																.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions