Job Description P23883 Confidence 100.00% Date Thu Jan 5 11:40:20 GMT 2012 Rank 27 Aligned Residues 471 % Identity 31% Template c1t90B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	R	L	F	I	N	G	E	Y	T	A	A	A	E	N	E	T	F	E	T	V	D	P	V	T	Q	A	P	L	A	K	I	A	R	G	K	S	V	D	I	D	R	A	M	S	A	A	R	G	V	F	E	R	G	D	W	S	L	S	S	P	A	K	R	K	A	V	L	N	K	L	A	D	L	M	E	A	H	A
Query Conservation
Alig confidence																																																							.	.
Template Conservation																																																							.	.
Template Sequence		K	L	K	N	Y	I	N	G	E	W	V	E	S	K	T	D	Q	Y	E	D	V	V	N	P	A	T	K	E	V	L	C	Q	V	P	I	S	T	K	E	D	I	D	Y	A	A	Q	T	A	A	E	A	F	K	.	.	T	W	S	K	V	A	V	P	R	R	A	R	I	L	F	N	F	Q	Q	L	L	S	Q	H	K
Template Known Secondary structure		B						T	T						S		S								T	T	T	T																											.	.			T	T	S																			T
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		E	E	L	A	L	L	E	T	L	D	T	G	K	P	I	R	H	S	L	R	D	D	I	P	G	A	A	R	A	I	R	W	Y	A	E	A	I	D	K	V	Y	G	E	V	A	.	T	T	S	S	H	E	L	A	M	I	V	R	E	P	V	G	V	I	A	A	I	V	P	W	N	F	P	L	L	L	T	C	W	K
Query Conservation																																															.
Alig confidence																				.																											.
Template Conservation																				.
Template Sequence		E	E	L	A	H	L	I	T	I	E	N	G	K	N	T	K	E	A	.	L	G	E	V	G	R	G	I	E	N	V	E	F	A	A	G	A	P	S	L	M	M	G	D	S	L	A	S	I	A	T	D	V	E	A	A	N	Y	R	Y	P	I	G	V	V	G	G	I	A	P	F	N	F	P	M	M	V	P	C	W	M
Template Known Secondary structure																				.															T	T															T	T											S								S	S		T	T
Template Predicted Secondary structure																				.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	P	A	L	A	A	G	N	S	V	I	L	K	P	S	E	K	S	P	L	S	A	I	R	L	A	G	L	A	K	E	A	G	L	P	D	G	V	L	N	V	V	T	G	F	G	H	E	A	G	Q	A	L	S	R	H	N	D	I	D	A	I	A	F	T	G	S	T	R	T	G	K	Q	L	L	K	D	A	G
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		F	P	M	A	I	A	L	G	N	T	F	I	L	K	P	S	E	R	T	P	L	L	T	E	K	L	V	E	L	F	E	K	A	G	L	P	K	G	V	F	N	V	V	Y	G	A	.	H	D	V	V	N	G	I	L	E	H	P	E	I	K	A	I	S	F	V	G	S	K	P	V	G	E	Y	V	Y	K	K	G	S
Template Known Secondary structure								T	T									T	T	S														T	T			T	T	S							S	.											T	T								S
Template Predicted Secondary structure																																																.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	N	M	K	R	V	W	L	E	A	G	G	K	S	A	N	I	V	F	A	D	C	P	D	L	Q	Q	A	A	S	A	T	A	A	G	I	F	Y	N	Q	G	Q	V	C	I	A	G	T	R	L	L	L	E	E	S	I	A	D	E	F	L	A	L	L	K	Q	Q	A	Q	N	W	Q	P	G	H	P	L	D	P
Query Conservation
Alig confidence		.																						.
Template Conservation		.																						.
Template Sequence		.	E	N	L	K	R	V	Q	S	L	T	G	A	K	N	H	T	I	V	L	N	D	.	A	N	L	E	D	T	V	T	N	I	V	G	A	A	F	G	S	A	G	E	R	C	M	A	C	A	V	V	T	V	E	E	G	I	A	D	E	F	M	A	K	L	Q	E	K	V	A	D	I	K	I	G	N	G	L	D	D
Template Known Secondary structure		.		T	T																	T	T	.																G	G	G	G			T	T									T	T	T														T			B	S		T	T	S	T
Template Predicted Secondary structure		.																						.
Template SS confidence
			242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.				.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		A	T	T	M	G	T	L	I	D	C	A	H	A	D	S	V	H	S	F	I	R	E	G	E	S	K	G	Q	L	L	L	D	G	R	.	.	.	N	A	G	L	A	A	A	I	G	P	T	I	F	V	D	V	D	P	N	A	S	L	S	R	E	E	I	F	G	P	V	L	V	V	T	R	F	T	S	E	E	Q	A
Query Conservation																																				.	.	.
Alig confidence																																				.	.	.
Template Conservation
Template Sequence		G	V	F	L	G	P	V	I	R	E	D	N	K	K	R	T	L	S	Y	I	E	K	G	L	E	E	G	A	R	L	V	C	D	G	R	E	N	V	S	D	D	G	Y	F	V	G	P	T	I	F	D	N	V	T	T	E	M	T	I	W	K	D	E	I	F	A	P	V	L	S	V	I	R	V	K	N	L	K	E	A
Template Known Secondary structure		T			B				S	S																		T							T	T	S	S			S	S	S	S									S			T	T	S					S				S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.	.			.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure																																														.															.	.
Query SS confidence																																														.															.	.
Query Sequence		L	Q	L	A	N	D	S	Q	Y	G	L	G	A	A	V	W	T	R	D	L	S	R	A	H	R	M	S	R	R	L	K	A	G	S	V	F	V	N	N	Y	N	D	G	D	.	M	T	V	P	F	G	G	Y	K	Q	S	G	N	G	.	.	R	D	K	S	L	H	A	L	E	K	F	T	E	L	K	T	I	W	I
Query Conservation																																														.															.	.
Alig confidence																																														.															.	.
Template Conservation
Template Sequence		I	E	I	A	N	K	S	E	F	A	N	G	A	C	L	F	T	S	N	S	N	A	I	R	Y	F	R	E	N	I	D	A	G	M	L	G	I	N	L	G	V	P	A	P	M	A	F	F	P	F	S	G	W	K	S	S	F	F	G	T	L	H	A	N	G	K	D	S	V	D	F	Y	T	R	K	K	V	V	T	A
Template Known Secondary structure								S	S			S																						S					S		S						T	T	S		B					T	T			S	S	S		B	S								T
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
		492	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	P	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		480	.	.	.