| Secondary structure and disorder prediction | |
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| Sequence | |
M | W | Y | F | A | W | I | L | G | T | L | L | A | C | S | F | G | V | I | T | A | L | A | L | E | H | V | E | S | G | K | A | G | Q | E | D | I |
| Secondary structure | |
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| Disorder | |
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| Disorder confidence | |
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| Confidence Key |
| High(9) | |
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Low (0) |
| ? | Disordered |
| Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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| 1 |
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PDB 2e74 chain B domain 1
Region: 2 - 11
Aligned: 10
Modelled: 10
Confidence: 11.5%
Identity: 30%
Fold: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Phyre2
| 2 |
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PDB 1q90 chain D
Region: 2 - 11
Aligned: 10
Modelled: 10
Confidence: 11.3%
Identity: 40%
Fold: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Phyre2
| 3 |
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PDB 1vf5 chain B
Region: 2 - 11
Aligned: 10
Modelled: 10
Confidence: 7.2%
Identity: 30%
Fold: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Phyre2
| 4 |
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PDB 2nr1 chain A
Region: 3 - 17
Aligned: 13
Modelled: 15
Confidence: 5.6%
Identity: 46%
PDB header:receptor
Chain: A: PDB Molecule:nr1 m2;
PDBTitle: transmembrane segment 2 of nmda receptor nr1, nmr, 102 structures
Phyre2
| 5 |
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PDB 3mk7 chain B
Region: 4 - 31
Aligned: 28
Modelled: 28
Confidence: 5.5%
Identity: 21%
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o;
PDBTitle: the structure of cbb3 cytochrome oxidase
Phyre2
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| Detailed template information | |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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| If you use the binding site
predictions from 3DLigandSite, please also cite: |
| 3DLigandSite: predicting ligand-binding sites using similar structures. |
| Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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