Job Description P0AER8 Confidence 93.71% Date Thu Jan 5 11:24:03 GMT 2012 Rank 1 Aligned Residues 256 % Identity 17% Template d2nwwa1 SCOP info Proton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein Resolution 3.20

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.							.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		V	A	G	G	L	L	V	A	L	A	L	L	V	L	K	K	.	.	.	.	.	.	S	M	G	W	E	V	N	F	D	M	S	L	R	D	P	L	M	L	A	F	F	A	T	I	G	L	N	A	N	I	A	S	L	R	A	G	G	R	V	V	G	I	F	L	I	V	V	V	G	L	L	V	M	Q	N	A	I	G
Query Conservation																		.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	G	A	I	V	G	L	I	L	G	H	Y	G	Y	A	H	A	V	H	T	Y	V	K	P	F	G	D	L	F	V	R	L	L	K	M	L	V	M	P	I	V	F	A	S	L	V	V	G	A	A	S	I	S	P	A	R	L	G	R	V	G	V	K	I	V	V	Y	Y	L	L	T	S	A	F	A	V	T	L	G
Template Known Secondary structure													T	T	T	T					T	T	T	T																									T	T	T		S		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	M	A	S	L	L	G	L	D	P	L	M	G	L	L	A	G	S	I	T	L	S	G	G	H	G	T	G	A	A	W	S	K	L	F	I	E	R	Y	G	F	T	N	A	T	E	V	A	M	A	C	A	T	F	G	L	V	L	G	G	L	I	G	G	P	V	A	R	Y	L	V	K	H	S	T	T	P	N	G
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	M	A	R	L	F	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	G	I	H	L	A	V
Template Known Secondary structure								S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.																																																																110	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		I	P	D	D	Q	E	V	P	T	A	F	E	K	P	D	V	G	R	M	I	T	S	L	V	L	I	E	T	I	A	L	I	A	I	C	L	T	V	G	K	I	V	A	Q	L	L	A	G	T	A	F	E	L	P	T	F	V	C	V	L	F	V	G	V	I	L	S	N	G	L	S	I	M	G	F	Y	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	Q	Q	F	Q	P	H	Q	A	P	P	L	V	H	I	L	L	D	I	V	P	T	N	P	F	G	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	Q	V	L	P	T	I	F	F	A	I	I	L	G	I	A	I	T	Y	L	M	N	S	E	N	E	K	V	R	K	S
Template Known Secondary structure																			G	G	G	S		S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																					T	T		S		T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
			269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.															.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Query SS confidence		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Query Sequence		.	R	V	F	E	R	A	V	S	V	L	G	N	V	S	L	S	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	M	A	L	M	G	L	K	L	W	E	L	A	S	L	A	L	P	M	L	A	I	L	V	V	Q	T	I	F	M	A	L	Y	A	I	F	V	T	W	R	M	M	G	K	N	.
Query Conservation		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Alig confidence		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.							.
Template Conservation																																																																										.
Template Sequence		A	E	T	L	L	D	A	I	N	G	L	A	E	A	M	Y	K	I	V	N	G	V	M	Q	Y	A	P	I	G	V	F	A	L	I	A	Y	V	M	A	E	Q	G	V	H	V	V	G	E	L	A	K	V	T	A	A	V	Y	V	G	L	T	L	Q	I	L	L	V	Y	F	V	L	L	.	K	I	Y	G	I	D	P
Template Known Secondary structure																								T	T	S																T	G	G	G			T																				T						.		T	T	T
Template Predicted Secondary structure																																																																										.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.
				333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure		.	.																																		.
Query SS confidence		.	.																																		.
Query Sequence		.	.	Y	D	A	A	V	L	A	A	G	H	C	G	F	G	L	G	A	T	P	T	A	I	A	N	M	Q	A	I	T	E	R	F	G	.	P	S	H	M	A	F	L	V	V	P	M
Query Conservation		.	.																																		.
Alig confidence		.	.																																		.
Template Conservation
Template Sequence		I	S	F	I	K	H	A	K	D	A	M	L	T	A	F	V	T	R	S	S	S	G	T	L	P	V	T	M	R	V	A	K	E	M	G	I	S	E	G	I	Y	S	F	T	L	P	L
Template Known Secondary structure																					T	G	G	G										T	T	T			T	T	T					T	T	T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions