Job Description P0AER8 Confidence 5.16% Date Thu Jan 5 11:24:03 GMT 2012 Rank 19 Aligned Residues 171 % Identity 17% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		21	.	.	.	.	.		.	.	.	30	.																.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Query SS confidence								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Query Sequence		R	K	L	V	H	S	.	V	S	F	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	T	I	P	E	P	V	A	G	G	L	L	V	A	L	A	L	L	V	L	K	K	S	M	.	.	.	.	G	W	E	V	N	F	D	M	S	L	R	D	P	L	M	L	A	F	F	A	T	I	G	L
Query Conservation								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Alig confidence								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation
Template Sequence		R	F	L	E	K	Y	V	M	P	V	A	G	K	V	A	E	Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	S	E	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M	A	L
Template Known Secondary structure				S	T	T	T	S																					G	G	G	T	T													T				T	T	T	T	T						T		S			T	T	G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130													.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	A	N	I	A	S	L	R	A	G	G	R	V	V	G	I	F	L	I	V	V	V	G	L	L	V	M	Q	N	A	I	G	I	G	M	A	S	L	L	G	L	D	P	L	M	G	L	L	A	G	.	.	.	.	.	.	.	.	.	.	.	.	S	I	T	L	S	G	G	H	G	T	G	A	A	W	S	K	L	F
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	V	F	G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	S																	S		S							T	T	T	S							S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																											83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	R	Y	G	F	T	N	A	T	E	V	A	M	A	C	A	T	F	G	L	V	L	G	G	L	I	G	G	P	V	A	R	Y	L	V	K	H	S	T	T	P	N	G	I	P	D	D	Q	E	V	P	T	A	F	E	K	P	D	V	G	R	M	I	T	S	L	V	L	I	E	T	I	A	L	I	A	I	C	L
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	L	M	G	S	Q	G	.	.	.	.	.	.	.	.	.	L	F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K	K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	.	.	.	.	.	.	.	.	.	.	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W
Template Known Secondary structure		T	T	T	T	T	T	T	T	.	.	.	.	.	.	.	.	.																					T	T		S					T	T	S								.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.										.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.											.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	G	K	I	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	R	L	I	F	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions