Job Description P0AER8 Confidence 3.62% Date Thu Jan 5 11:24:03 GMT 2012 Rank 45 Aligned Residues 292 % Identity 15% Template c3qe7A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa Resolution 2.78 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.																						.	.	.
Query SS confidence																					.	.																						.	.	.
Query Sequence		D	T	L	A	T	L	V	A	A	T	L	T	L	L	L	G	R	K	L	.	.	V	H	S	V	S	F	L	K	K	Y	T	I	P	E	P	V	A	G	G	L	L	.	.	.	V	A	L	A	L	L	V	L	K	K	S	M	G	W	E	V	N	F	D	M	S	L	R	D	P	L	M	L	A	F	F	A	T	I	G
Query Conservation																					.	.																						.	.	.
Alig confidence																					.	.											.											.	.	.
Template Conservation																																	.
Template Sequence		V	A	L	G	G	F	I	M	C	G	V	L	F	C	L	V	S	F	I	V	K	K	A	G	T	G	W	L	D	V	L	.	F	P	P	A	A	M	G	A	I	V	A	V	I	G	L	E	L	A	G	V	A	A	G	M	A	G	L	L	P	A	E	G	Q	T	P	D	S	K	T	I	I	I	S	I	T	T	L	A
Template Known Secondary structure																							T	T		S							.																										T	S	S		B	T	T	B
Template Predicted Secondary structure																																	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.																				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	A	N	I	A	S	L	R	A	G	G	R	V	V	G	I	F	L	I	V	V	V	G	L	L	V	M	Q	N	A	I	G	I	G	M	A	S	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	D	P	L	M	G	L	L	A	G	S	I	T	L	S	G	G	H	G	T
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.						.
Template Conservation																																																																							.						.
Template Sequence		V	T	V	L	G	S	V	L	F	R	G	F	L	A	I	I	P	I	L	I	G	V	L	V	G	Y	A	L	S	F	A	M	G	I	V	D	T	T	P	I	I	N	A	H	W	F	A	L	P	T	L	Y	T	P	R	F	E	W	F	A	I	L	T	I	L	P	A	A	L	.	V	V	I	A	E	.	H	V	G	H
Template Known Secondary structure									S	S	S	T	T	T	T	T																				T	T	S	S					S		S	S																			T					.						.
Template Predicted Secondary structure																																																																							.						.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.		.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	A	W	S	K	L	F	I	E	R	Y	G	F	T	N	A	T	E	V	A	M	A	C	A	T	F	G	L	V	L	G	G	L	I	G	G	P	V	A	R	Y	L	V	K	H	S	T	T	P	N	G	I	P	D	D	Q	E	V	P	T	A	F	E	K	P	D	V	G	R	M	I	T	S	L	V	L	I	E	T
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	V	T	A	N	I	V	K	K	D	L	L	R	D	P	G	L	H	R	S	M	F	A	N	G	L	S	T	V	I	S	G	F	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	P	N	T	T	Y	G	E	N	I	G	V	M	A	I	T	R	V	Y	S	T	W	V	I	G	G	A
Template Known Secondary structure										T	S		T																								T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	B
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.																	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		I	A	L	I	A	I	C	L	T	V	G	K	I	V	A	Q	L	L	A	G	T	A	F	E	L	P	T	F	V	C	V	L	F	V	.	.	G	V	I	L	S	N	G	L	S	I	M	G	F	Y	R	V	F	E	R	A	V	S	V	L	G	N	V	S	L	S	L	F	L	A	M	A	L	M	G	L	K	L	W	E
Query Conservation																																				.	.
Alig confidence																			.	.	.															.	.																																											.	.
Template Conservation																			.	.	.																																																											.	.
Template Sequence		A	I	F	A	I	L	L	S	C	V	G	K	L	A	A	A	I	.	.	.	Q	M	I	P	L	P	V	M	G	G	V	S	L	L	L	Y	G	V	I	G	A	S	G	I	R	V	L	I	E	S	K	V	D	Y	N	K	A	Q	N	L	I	L	T	S	V	I	L	I	I	G	V	S	G	A	K	V	N	I	.	.
Template Known Secondary structure									T										.	.	.	T	T	S																											T	T	S		T	T	S																						S	.	.
Template Predicted Secondary structure																			.	.	.																																																											.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.				.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	S	L	A	L	P	M	L	A	I	L	V	V	Q	T	I	F	M	A	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	A	E	L	K	G	M	A	L	A	T	I	V	G	I	G	L	S	L	I	F
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions