|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | |
. | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . |
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | I | Y | Q | T | T | I | T | R | I | G | A | S | A | I | D | A | L | S | D | Q | M | L | I | T | F | R | E | G | A | P | A | D | L | E | E | Y | C | F | I | H | C | H | G | E | L | K | G | . |
A | L | H | P | G | L | Q | F | S | L | G | Q | H | R | Y | P | V | T | A | V | G | S | V | A | E | D | N | L | R | E | L |
Query Conservation |   |
  |   |
|   |   |   |
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |
|
|   |   |
|   |
|   |   |
|
|
|   |   |   |   |   |   |   | . |   |
|   |   |
|
|   |
|   |
|
|   |   |   |
|   |
|
|
|
|
|   |   |
|   |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |
|
|   |
|
|   |   |
|   |   |   | . |   |
|   |   |
|
|
|
|   |
|   |
|
|   |   |
|   |
|   |   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|   |
|
|   |   |   |
|   |
|
|
|
|
|   |   |
|   |   |
|
|   |   |
|
Template Sequence |   |
W | K | X | Q | A | T | V | T | E | I | G | K | H | A | I | D | D | . |
S | E | K | X | I | I | L | F | G | E | T | A | T | D | T | L | K | Q | H | A | V | I | Q | S | F | P | E | K | D | Q | V | T | L | A | E | G | D | H | L | K | I | G | D | T | N | Y | T | I | T | K | V | G | S | F | A | N | S | N | L | Q | S | I |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
| T | T | T |
|
| T | . | T | S |
|  |  |  |  |  |
| T | T |
|
|  |  |  |  | T | T | S |  |  |  |  |
| T | T | G | G | G |
|
|
|
| T | T |
|  |  |  |  | T | T |  |  |  |  |  |  |  |  |
| T | T |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
| . |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | |
|
|
. | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|
| . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | H | V | T | L | R | F | D | G | L | N | E | A | E | . |
. |
. |
F | P | G | T | V | H | V | A | G | P | V | P | D | D | I | A | P | G | S | V | L | K | F |
Query Conservation |   |
|
|   |
|
|   |
|   |
|   |   |   |   |   | . | . | . |
|
|
|   |
|   |
|   |   |   |   |   |
|   |
|   |   |
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |
|   |
|   |   |   |   |
|   |   |   |
|
|
|   |
|   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |
|   |   |
Template Sequence |   |
A | H | S | T | L | I | F | A | D | A | P | T | D | E | D | D | V | I | R | N | G | V | Y | L | T | P | H | Q | L | P | K | I | T | I | G | T | T | I | D | Y |
Template Known Secondary structure |   |
|
|  |  |  |  |
| S |
|
|
| S | S | G | G | G | S |
| T | T |  |  |  |  |  | S |
| S |
|
|
|
|
| T | T |
|  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
  |