Job Description P52005 Confidence 95.38% Date Thu Jan 5 12:04:53 GMT 2012 Rank 51 Aligned Residues 156 % Identity 14% Template c2jblC_ PDB info PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis Resolution 2.4 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		L	L	I	A	V	V	V	G	G	G	G	L	L	L	A	Q	K	V	L	H	K	T	S	D	T	A	F	C	L	S	C	H	S	M	S	K	P	.	F	E	E	Y	Q	G	T	V	H	F	S	N	Q	K	G	I	R	A	E	C	A	D	C	H	I	P	K	S	G	M	D	Y	L	F	A	K	L	K	A	S	K	D
Query Conservation																																							.
Alig confidence																																							.					.	.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		V	V	A	R	R	M	L	E	M	T	R	A	I	N	T	N	W	T	Q	H	V	A	Q	T	G	V	T	C	Y	T	C	H	R	G	T	P	L	P	P	Y	V	R	.	.	.	.	.	Y	L	E	P	T	L	P	L	N	N	R	E	T	P	T	H	V	E	R	V	E	T	R	S	G	Y	V	V	R	L	A	K	Y
Template Known Secondary structure																							T	T	T									T	T	S	S	S		S	S		B	.	.	.	.	.		S	S			S	S	S	S	T	T	S				T	T	T	S	T	T		G	G	G
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
											91	.	.	.	.	.	.	.	.	100	.															.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.		.	140		.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.											.			.
Query SS confidence		.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.											.			.
Query Sequence		.	.	.	.	.	.	.	.	.	I	Y	H	E	F	V	S	G	K	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	D	K	F	E	A	H	R	Q	E	M	A	E	T	V	W	K	E	L	K	A	T	D	S	A	T	.	.	.	C	R	S	C	H	S	F	D	A	M	.	D	I	.	A	S
Query Conservation		.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.											.			.
Alig confidence		.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.											.			.
Template Conservation
Template Sequence		T	A	Y	S	A	L	N	Y	D	P	F	T	M	F	L	A	N	D	K	R	Q	V	R	V	V	P	Q	T	A	L	P	L	V	G	V	S	R	G	K	E	R	R	P	L	S	D	A	Y	A	T	F	A	L	M	M	S	I	S	D	S	L	G	T	N	C	T	F	C	H	N	A	Q	T	F	E	S	W	G	K	K
Template Known Secondary structure		T	T	T												T	S		S		S					S		S	S	S	S			T	T	T	S	S	G	G	G	S			T																		T			G	G	G	T	B		G	G	G	T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
					143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.																									160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure		.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	Q	S	E	S	A	Q	K	M	H	N	K	A	Q	K	D	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	C	I	D	C	H	K	G	I	A	H	F	P
Query Conservation		.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	T	P	Q	R	A	I	A	W	W	G	I	R	M	V	R	D	L	N	M	N	Y	L	A	P	L	N	A	S	L	P	A	S	R	L	G	R	Q	G	E	A	P	Q	A	D	C	R	T	C	H	Q	G	V	T	K	P	L
Template Known Secondary structure		B																					T	T	G	G	G	G	G	T	S		G	G	G	S		T	T	S				B								T	T	S	S	S	G	G
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions