Job Description P52005 Confidence 98.36% Date Thu Jan 5 12:04:53 GMT 2012 Rank 9 Aligned Residues 141 % Identity 16% Template c1oahA_ PDB info PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). Resolution 2.3 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.												.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																	.	.					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	T	A	F	C	L	S	C	H	S	M	S	K	P	.	.	F	E	E	Y	.	.	.	.	.	.	.	.	.	.	.	Q	G	T	V	H	F	S	N	Q	K	G	I	R	A	E	C	A	D	C	H	I	P	K	S	G	M	D	Y	L	F	A	K	L	K	A	S	K	D	I	Y	H	E	F	V	S	G	K	I
Query Conservation																	.	.					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.					.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	P	A	T	C	W	N	C	K	T	P	K	M	M	E	W	V	S	Q	Y	G	D	K	F	W	S	M	D	V	N	E	F	R	A	K	D	K	I	N	A	H	D	E	T	I	G	C	A	N	C	H	D	P	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	E	L	R	L
Template Known Secondary structure		S	S	B	G	G	G	G	T	T	T		T	T									G	G	G	T	T	T	S	B	G	G	G	G		S	T	T	T			T	T	T	S	S	S		G	G	G	T	B		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																				.	.	.	200	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	D	D	K	F	E	A	H	R	Q	E	M	A	E	T	V	W	K	E	L	K	A	T	D	S	A	T	C	R	S	C	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	S	E	P	L	K	D	W	L	K	R	S	G	K	D	W	Q	K	M	S	R	N	E	K	R	T	L	V	C	A	Q	C	H	V	E	Y	Y	F	T	H	K	D	N	G	P	A	A	K	P	V	F	P	W	D	N	G	F	N	P	E	D	M	Y	Q	Y	Y	K	G	H	G	A	K	G	P	D	G	K	P	G	P
Template Known Secondary structure													T	T			G	G	G	S												T	T	S	S							T	T	T	S	S	T	T							T	T		S	S								T	T	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
											135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	F	D	A	M	D	I	A	S	Q	S	E	S	A	Q	K	M	H	N	K	A	Q	K	D	S	E	T	C	I	D	C	H	K	G	I	A	H	F	P	P	E	I	K	M	D	D	N	A	A	H	E	L	E	S	Q	A	A	T	S	V	T	N	G	A	H	I	Y	P	F	K	T	S
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.														.	.	.	.	.	.	.
Template Sequence		F	V	D	W	V	H	A	A	S	K	V	P	M	I	K	M	Q	H	P	E	Y	E	T	F	Q	D	G	P	H	G	A	A	G	V	S	C	A	D	C	H	.	.	.	.	.	.	M	Q	Y	I	S	S	H	W	M	T	S	P	M	.	.	.	.	.	.	.	K	D	P	E	M	R	A	C	R	Q	C	H	A	D
Template Known Secondary structure				S				T	T	T																T	T	S	T	T	G	G	G	T								.	.	.	.	.	.	S									S		G	G	.	.	.	.	.	.	.	G		T	T		T	T	T	T	T	T	S	T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.							.	.	.	.	.	.	.	.	330	.	.	.	.								.	.	.	.	.	340	.	.	.	.	.	.	.	.
		206
Predicted Secondary structure
Query SS confidence
Query Sequence		H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		356

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions