Phyre 2 alignment of P52005 with c1gq1B

Job Description P52005
Confidence 91.82% Date Thu Jan 5 12:04:53 GMT 2012

Rank 114 Aligned Residues 58

% Identity 22% Template c1gq1B_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form

Resolution 1.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.																					.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	P	L	W	Q	Y	A	E	K	L	D	D	T	Y	C	A	G	C	H	A	P	I	A	A	D	H	Y	T	V	N	A	W	P	S	I	A	K	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	R	T	S	M	S	E	N	E	L	D	I	L	T	R	Y	F	Q
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	A	Q	Y	N	E	A	N	K	I	Y	F	E	R	C	A	G	C	H	G	V	L	R	K	G	A	T	G	K	A	L	T	P	D	L	T	R	D	L	G	F	D	Y	L	Q	S	F	I	T	Y	G	S	P	A	G	M	P	N	W	G	T	S	G	E	L	S	A	E	Q	V	D	L	M	A	N	Y	L	L
Template Known Secondary structure															T						T	T	S	S		S	S	S																						T						S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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