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Job DescriptionP21893
Confidence32.52%DateThu Jan 5 11:38:41 GMT 2012
Rank254Aligned Residues99
% Identity10%Templatec3td9A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:branched chain amino acid abc transporter, periplasmic PDBTitle: crystal structure of a leucine binding protein livk (tm1135) from2 thermotoga maritima msb8 at 1.90 a resolution
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.........70.........80.........90.........100.........110.........120.........130......
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Query Sequence  VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV
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Template Sequence  GAAXAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQD. . . . FSAQLSVAXSFNPDAIYIT
Template Known Secondary structure  TS


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   140.........150.........160.........170.........180.........190...... ...200.........210.....
 
   137..140.........150.........
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Query Sequence  DNGISSHAGVEHARSLGIPVIVT
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Template Sequence  GYYPEIALISRQARQLGFTGYIL
Template Known Secondary structure  S
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   216...220.........230........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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