 |
Job Description | P21893 | Confidence | 85.20% | Date | Thu Jan 5 11:38:41 GMT 2012 |
Rank | 22 | Aligned Residues | 97 |
% Identity | 14% | Template | c3g98B_ |
PDB info |
PDB header:ligase | Chain: B: PDB Molecule:alanyl-trna synthetase; |
PDBTitle: crystal structure of the c-ala domain from aquifex aeolicus2 alanyl-trna synthetase
|
Resolution | 1.85 Å |
|
 |
  |   |
356 | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | |
|
|
|
. | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | G | L | A | M | Y | H | P | E | W | H | Q | G | V | V | G | I | L | A | S | R | I | K | E | R | F | H | R | P | V | I | A | F | A | P | A | G | D | G | T | L | K | G | S | G | R | S | I | Q | . |
. |
. |
. |
G | L | H | M | R | D | A | L | E | R | L | D | T | L | Y | P | G | M | M | L | K | F | G | G | H | A | M |
Query Conservation |   |
  |   |
|
|   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |
|
|   |
|
|   |   |   |   |   |   |
|   |   |
|
|
|   |
|
|   |   | . | . | . | . |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |
|
|
| . | . |
|
|
|   |   |   |   |
Template Sequence |   |
T | L | H | Y | G | V | F | E | E | V | E | P | E | E | L | R | N | L | A | D | M | L | R | Q | R | T | K | K | D | V | V | F | I | A | S | R | K | G | D | K | I | N | F | V | I | G | V | S | K | E | I | S | D | K | V | N | A | K | E | V | I | R | E | V | G | K | V | L | K | G | G | . |
. |
G | G | G | R | A | D | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | S | S | S | S |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |
| G | G | G | T | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  | T | T |  |  | . | . |  |  |  |
| S | S |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
766 | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . | . | 800 | . | . | . | . | . | . | . | . | . | 810 | . | . | . | . | . | . | . | . | . | 820 | . | . | . | . | . | . | . | . | . | 830 | . | . | . | . | . | . | |
|
. | . | . | 840 | . | . | . |
  |
  |   |
432 | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | G | L | S | L | E | E | D | K | F | K | L | F | Q | Q | R | F | G | E | L | V | T |
Query Conservation |   |
|
|
|   |
|
|   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |
|   |
Template Sequence |   |
A | Q | G | G | G | K | A | P | D | K | F | P | E | A | V | K | L | L | K | E | I | L | S |
Template Known Secondary structure |   |
 |  |  |  |  | S |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
844 | . | . | . | . | . | 850 | . | . | . | . | . | . | . | . | . | 860 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|