Job Description P21893 Confidence 100.00% Date Thu Jan 5 11:38:41 GMT 2012 Rank 5 Aligned Residues 301 % Identity 16% Template c3devB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:sh1221; PDBTitle: crystal structure of sh1221 protein from staphylococcus haemolyticus,2 northeast structural genomics consortium target shr87 Resolution 3.10 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																								.	.																																						.	.
Query SS confidence																								.	.																																						.	.
Query Sequence		K	A	V	E	I	L	Y	N	A	F	R	E	G	T	R	I	I	V	V	G	D	F	.	.	D	A	D	G	A	T	S	T	A	L	S	V	L	A	M	R	S	L	G	C	S	N	I	D	Y	L	V	P	N	R	F	E	D	G	Y	G	L	.	.	S	P	E	V	V	D	Q	A	H	A	R	G	A	Q	L	I	V
Query Conservation																								.	.																																						.	.
Alig confidence																								.	.																				.																		.	.												.
Template Conservation																																													.																															.
Template Sequence		E	I	F	N	E	I	X	Q	R	V	K	E	A	E	T	I	I	I	H	R	H	V	R	P	D	P	D	A	Y	G	S	Q	L	G	L	K	L	Y	L	E	R	K	F	.	P	E	K	N	I	Y	A	T	G	E	A	E	P	S	L	S	F	I	G	D	L	D	E	I	D	D	S	V	Y	S	.	D	A	L	V	I
Template Known Secondary structure													T		S							B	S	S																					.	T	T	S										G	G	G	T	T	T								S	S	T	T	T	.	T
Template Predicted Secondary structure																																													.																															.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	D	N	G	I	S	S	H	A	G	V	E	H	A	R	S	L	G	I	P	V	I	V	T	D	H	H	L	P	G	D	T	L	P	A	A	E	A	I	I	N	P	N	L	R	D	C	N	F	P	S	K	S	L	A	G	V	G	V	A	F	Y	L	M	L	A	L	R	T	F	L	R	D	Q	G	W	F	D	E
Query Conservation
Alig confidence							.	.																																								.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.																																								.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	C	D	T	A	.	.	N	A	P	R	I	D	D	Q	R	Y	L	N	G	Q	S	L	I	K	I	D	H	H	P	A	T	D	Q	Y	G	D	V	N	F	V	N	T	E	A	S	.	.	.	.	.	.	.	.	.	S	T	S	E	I	I	F	D	F	I	S	H	F	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S		S	.	.	S	G	G	G	B	S	S	G	G	G	G	S	S	S								S		S	S				S	S						T	T	S	S	.	.	.	.	.	.	.	.	.												T	T	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.																																								.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.										.	.	.	.	.	130	.	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	I	A	I	P	N	L	A	E	L	L	D	L	V	A	L	G	T	V	A	D	V	V	P	L	D	A	N	N	R	I	L	T	W	Q	G	M	S	R	I	R	A	G	K	C	R	P	G	I	K	A	L	L	E	V	A	N	R	D	A	Q	K	L	A	A	S	D	L	G	F	A	L	G	P	R	L	N	A	A
Query Conservation
Alig confidence		.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	N	D	L	S	I	I	D	E	H	V	A	R	V	L	Y	L	G	I	V	G	D	T	G	R	F	L	F	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	P	H	T	X	E	V	A	S	Q	L	L	A	Y
Template Known Secondary structure		.	T		T	T	T																	T	T	T	T	T	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	S
Template Predicted Secondary structure		.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.																																				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.							.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.
Query Sequence		G	R	L	D	D	M	S	V	G	V	A	L	L	L	C	D	N	I	G	E	A	R	V	L	A	N	E	L	D	A	L	N	Q	T	R	K	E	I	E	Q	G	M	Q	I	E	A	L	T	L	C	E	K	L	E	R	S	R	D	T	L	P	G	G	L	A	M	Y	H	P	.	.	.	.	.	.	E	W	H	Q	G
Query Conservation																																																																							.	.	.	.	.	.
Alig confidence				.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation				.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	F	.	.	N	H	N	A	E	L	N	K	X	S	E	K	D	P	K	L	X	P	F	Q	G	Y	V	L	Q	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	S	D	S	H	E	Y	C	Q	I	K	I	T	N	D	V	L	K	Q	F	D	I	Q	P	N
Template Known Secondary structure		S	S	.	.														G	G	G										S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B		T	T	S	S														T	T
Template Predicted Secondary structure				.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		182	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																								.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		V	V	G	I	L	A	S	R	I	K	E	R	F	H	R	P	V	I	A	F	A	P	A	G	D	G	T	L	K	G	S	G	R	S	I	Q	G	L	H	M	R	D	A	L	E	R	L	D	T	L	Y	P	G	M	M	L	K	F	G	G	H	A	M	A	A	G	L	S	L	E	.	E	D	K	F	K	L	F	Q	Q
Query Conservation																																																																								.
Alig confidence																																					.												.	.	.	.	.	.	.	.	.															.
Template Conservation																																					.												.	.	.	.	.	.	.	.	.
Template Sequence		E	A	S	Q	F	V	N	T	V	A	D	I	S	G	L	K	I	W	X	F	G	V	D	E	G	D	Q	I	R	C	R	I	R	S	K	.	G	I	T	I	N	D	V	A	N	Q	F	.	.	.	.	.	.	.	.	.	G	G	G	G	H	P	N	A	S	G	V	S	V	Y	S	W	D	E	F	E	E	L	A	Q
Template Known Secondary structure				T	T		G	G	G	S	T	T	S	T	T											S	S	S								S	.	S	S									T	.	.	.	.	.	.	.	.	.	T					T	T							S	S
Template Predicted Secondary structure																																					.												.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.										.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		448	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	G	E	L	V	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	R	Q	K	L	L	E
Template Known Secondary structure							T	T	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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