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Job DescriptionP21893
Confidence100.00%DateThu Jan 5 11:38:41 GMT 2012
Rank5Aligned Residues301
% Identity16%Templatec3devB_
PDB info PDB header:structural genomics, unknown functionChain: B: PDB Molecule:sh1221; PDBTitle: crystal structure of sh1221 protein from staphylococcus haemolyticus,2 northeast structural genomics consortium target shr87
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  KAVEILYNAFREGTRIIVVGDF. . DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL. . SPEVVDQAHARGAQLIV
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Template Sequence  EIFNEIXQRVKEAETIIIHRHVRPDPDAYGSQLGLKLYLERKF. PEKNIYATGEAEPSLSFIGDLDEIDDSVYS. DALVI
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S
BSS


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GGGTTT






SSTTT.T
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Query Sequence  TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDE
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Template Sequence  VCDTA. . NAPRIDDQRYLNGQSLIKIDHHPATDQYGDVNFVNTEAS. . . . . . . . . STSEIIFDFISHF. . . . . . . . . . . .
Template Known Secondary structure  S
S..SGGGBSSGGGGSSS

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   81.... ....90.........100.........110.........120.... .....130.......
 
   215....220.........230.........240.........250.........260.........270.........280.........290....
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Query Sequence  RNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA
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Template Sequence  . NDLSIIDEHVARVLYLGIVGDTGRFLFSN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TSPHTXEVASQLLAY
Template Known Secondary structure  .T
TTT

TTTTTSTT...................................

TS
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   138.140.........150.........160...... ...170.........180.
 
   295....300.........310.........320.........330.........340.........350.........360... .....
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Query Sequence  GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP. . . . . . EWHQG
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Template Sequence  PF. . NHNAELNKXSEKDPKLXPFQGYVLQNF. . . . . . . . . . . . . . . . . . . . . . . ELSDSHEYCQIKITNDVLKQFDIQPN
Template Known Secondary structure  SS..



GGGS
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B
TTSS
TT

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   182. ......190.........200.........210 .........220.........230......
 
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Query Sequence  VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE. EDKFKLFQQ
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Template Sequence  EASQFVNTVADISGLKIWXFGVDEGDQIRCRIRSK. GITINDVANQF. . . . . . . . . GGGGHPNASGVSVYSWDEFEELAQ
Template Known Secondary structure  TT
GGGSTTSTT


SSSS.SS

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   237..240.........250.........260.........270. ........280.. .......290.........300......
 
   448.450.....
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Query Sequence  RFGELVTE
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Template Sequence  ALRQKLLE
Template Known Secondary structure  TTS
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   307..310....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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