Job Description P21893 Confidence 100.00% Date Thu Jan 5 11:38:41 GMT 2012 Rank 1 Aligned Residues 481 % Identity 35% Template c2zxrA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:single-stranded dna specific exonuclease recj; PDBTitle: crystal structure of recj in complex with mg2+ from thermus2 thermophilus hb8 Resolution 2.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		K	Q	Q	I	Q	L	R	R	R	E	V	D	E	.	.	.	T	A	D	L	P	A	E	L	P	P	L	L	R	R	L	Y	A	S	R	G	V	R	S	A	Q	E	L	E	R	S	V	K	G	M	L	P	W	Q	Q	L	S	G	V	E	K	A	V	E	I	L	Y	N	A	F	R	E	G	T	R	I	I	V	V	G
Query Conservation															.	.	.
Alig confidence															.	.	.																																.	.	.	.
Template Conservation																																																	.	.	.	.
Template Sequence		R	V	R	W	R	V	L	S	L	P	P	L	A	Q	W	R	E	V	M	A	A	L	E	V	G	P	E	A	A	L	A	Y	W	H	R	G	F	R	R	K	E	D	L	D	P	P	L	.	.	.	.	A	L	L	P	L	K	G	L	R	E	A	A	A	L	L	E	E	A	L	R	Q	G	K	R	I	R	V	H	G
Template Known Secondary structure		T																						T												T	T			S	G	G	G	T	S				.	.	.	.						T	T														T	T
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	D	A	D	G	A	T	S	T	A	L	S	V	L	A	M	R	S	L	G	C	S	N	I	D	Y	L	V	P	N	R	F	E	D	G	Y	G	L	S	P	E	V	V	D	Q	A	H	A	R	G	A	Q	L	I	V	T	V	D	N	G	I	S	S	H	A	G	V	E	H	A	R	S	L	G	I	P	V	I	V
Query Conservation
Alig confidence																							.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Y	D	A	D	G	L	T	G	T	A	I	L	V	R	G	L	A	A	L	G	.	A	D	V	H	P	F	I	P	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	L	T	V	D	C	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	I	V
Template Known Secondary structure			S	S																	T	T	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110																						.	.	.	.	.	.	.	.	.															120	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	H	H	L	P	G	D	T	L	P	A	A	E	A	I	I	N	P	N	L	R	D	C	N	F	P	S	K	S	L	A	G	V	G	V	A	F	Y	L	M	L	A	L	R	T	F	L	R	D	Q	G	W	F	D	E	R	N	I	A	I	P	N	L	A	E	L	L	D	L	V	A	L	G	T	V	A	D	V	V
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.														.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.														.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	H	H	T	L	.	.	.	.	.	.	.	.	.	V	V	H	P	A	L	T	P	D	L	K	E	K	.	.	P	T	G	A	G	V	A	F	L	L	L	W	A	L	H	E	R	L	G	L	P	.	.	.	.	.	.	.	.	.	.	.	P	P	L	E	Y	A	D	L	A	A	V	G	T	I	A	D	V	A
Template Known Secondary structure								.	.	.	.	.	.	.	.	.				G	G	G	S	T	T					.	.																		T	T			.	.	.	.	.	.	.	.	.	.	.			G	G	G											T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.														.	.																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.										.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.												.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	D	A	N	N	R	I	L	T	W	Q	G	M	S	R	I	R	A	G	K	C	R	P	G	I	K	A	L	L	E	V	A	N	R	D	A	Q	K	L	A	A	S	D	L	G	F	A	L	G	P	R	L	N	A	A	G	R	L	D	D	M	S	V	G	V	A	L	L	L	C	D	N	I	G	E	A	R	V	L
Query Conservation
Alig confidence																							.															.	.	.
Template Conservation																							.															.	.	.
Template Sequence		P	L	W	G	W	N	R	A	L	V	K	E	G	L	A	R	I	P	A	S	S	.	W	V	G	L	R	L	L	A	E	A	V	G	Y	T	.	.	.	G	K	A	V	E	V	A	F	R	I	A	P	R	I	N	A	A	S	R	L	G	E	A	E	K	A	L	R	L	L	L	T	D	D	A	A	E	A	Q	A	L
Template Known Secondary structure				S														G	G	G		S	.	S										T	T			.	.	.	S								T											T	T
Template Predicted Secondary structure																							.															.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	E	L	D	A	L	N	Q	T	R	K	E	I	E	Q	G	M	Q	I	E	A	L	T	L	C	E	K	L	E	R	S	R	D	T	L	P	G	G	L	A	M	Y	H	P	E	W	H	Q	G	V	V	G	I	L	A	S	R	I	K	E	R	F	H	R	P	V	I	A	F	A	P	A	G	D	G	T	L	K	G
Query Conservation
Alig confidence																													.	.	.	.	.	.	.																																								.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.																																								.	.	.	.	.
Template Sequence		V	G	E	L	H	R	L	N	A	R	R	Q	T	L	E	E	A	M	L	R	K	L	L	P	Q	A	D	.	.	.	.	.	.	.	P	E	A	K	A	I	V	L	L	D	P	E	G	H	P	G	V	M	G	I	V	A	S	R	I	L	E	A	T	L	R	P	V	F	L	V	A	Q	G	.	.	.	.	.	K	G
Template Known Secondary structure																								T	T	S	S		.	.	.	.	.	.	.	T	T		S	S						T	T																			S							T	T	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.																																								.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.								.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.						.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	R	S	I	Q	G	L	H	M	R	D	A	L	E	R	L	D	T	L	Y	P	G	M	M	L	K	F	G	G	H	A	M	A	A	G	L	S	L	E	E	D	K	F	K	L	F	Q	Q	R	F	G	E	L	V	T	E	W	L	D	P	S	L	L	Q	G	E	V	V	S	D	G	P	L	S	P	A	E	M	T
Query Conservation
Alig confidence																						.	.	.	.																																			.	.	.
Template Conservation																						.	.	.	.																																			.	.	.
Template Sequence		T	V	R	S	L	A	P	I	S	A	V	E	A	L	R	S	A	E	D	L	.	.	.	.	L	L	R	Y	G	G	H	K	E	A	A	G	F	A	M	D	E	A	L	F	P	A	F	K	A	R	V	E	A	Y	A	A	R	F	.	.	.	P	D	P	V	R	E	V	A	L	L	D	L	L	P	E	P	G	L	L
Template Known Secondary structure							T	T										T	G	G	G	.	.	.	.		S						S	S								G	G	G														T	S	.	.	.																G	G	G
Template Predicted Secondary structure																						.	.	.	.																																			.	.	.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.					.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.				.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	V	A	Q	L	L	R	D	A	G	P	W	G	Q	M	F	P	E	P	L	F	D	G	H	F	R	L	L	Q	Q	R	L	V	G	E	R	H	L	K	V	M	V	E	P	V	G	G	G	P	L	L	D	G	I	A	F	N	V	D	T	A	L	W	P	D	N	G	V	R	E	V	Q	L	A	Y	K	L	D	I
Query Conservation
Alig confidence																																					.												.	.	.	.											.	.	.	.
Template Conservation																																					.												.	.	.	.											.	.	.	.
Template Sequence		P	Q	V	F	R	E	L	A	L	L	E	P	Y	G	E	G	N	P	E	P	L	F	L	L	F	G	A	P	E	E	A	R	R	L	G	.	E	G	R	H	L	A	F	R	L	K	G	.	.	.	.	V	R	V	L	A	W	K	Q	G	D	.	.	.	.	L	A	L	P	P	E	V	E	V	A	G	L	L	S	E
Template Known Secondary structure									G	G	G		S		S	S	S	S																	S	S	.	S	S	S							T	T	.	.	.	.									S	S	.	.	.	.		S			S	S
Template Predicted Secondary structure																																					.												.	.	.	.											.	.	.	.
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.		.	.	.	.	480	.	.	.	.	.	.					.	.	.	490	.	.	.	.	.	.					.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	F	R	G	N	R	S	L	Q	I	I	I	D	N	I	W	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	W	N	G	H	L	A	Y	E	V	Q	A	V	D	L	R	K
Template Known Secondary structure					T	T													S
Template Predicted Secondary structure
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.