Job Description P21893 Confidence 60.14% Date Thu Jan 5 11:38:41 GMT 2012 Rank 87 Aligned Residues 93 % Identity 18% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	S	G	V	E	K	A	V	E	I	L	Y	N	A	F	R	E	G	T	R	I	I	V	V	G	D	F	D	A	D	G	A	T	S	T	A	L	S	V	L	A	M	R	S	L	G	C	S	N	I	D	Y	L	V	P	N	R	F	E	D	G	Y	G	L	S	P	E	V	V	D	Q	A	H	A	R	G	A	Q	L
Query Conservation
Alig confidence																.														.	.	.	.																.	.	.	.												.	.										.	.
Template Conservation																.														.	.	.	.																.	.	.	.												.	.										.	.
Template Sequence		T	W	E	K	L	L	L	A	A	R	A	I	V	A	.	I	E	N	P	A	D	V	S	V	I	S	S	R	.	.	.	.	N	T	G	Q	R	A	V	L	K	F	A	A	A	T	G	.	.	.	.	A	T	P	I	A	G	R	F	T	P	G	.	.	F	T	N	Q	I	Q	A	A	F	.	.	R	E	P	R	L
Template Known Secondary structure																.	S	S		G	G	G							S	.	.	.	.																.	.	.	.						S	S					.	.				T	T		S	S		.	.				S
Template Predicted Secondary structure																.														.	.	.	.																.	.	.	.												.	.										.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.					80	.	.	.	.	.	.	.	.	.	90	.	.	.	.					.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.			.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	T	V	D	N	G	I	S	S	H	A	G	V	E	H	A	R	S	L	G	I	P	V	I	V	T
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		L	V	V	T	D	.	P	R	A	D	H	Q	P	L	T	E	A	S	Y	V	N	L	P	T	I	A	L
Template Known Secondary structure					S		.	T	T	T	T											T
Template Predicted Secondary structure							.
Template SS confidence
		121	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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